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PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | GSMUA_Achr9P04290_001 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Zingiberales; Musaceae; Musa
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Family | Dof | ||||||||
Protein Properties | Length: 291aa MW: 31553.2 Da PI: 6.3378 | ||||||||
Description | Dof family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | zf-Dof | 127.4 | 4.2e-40 | 38 | 99 | 2 | 63 |
zf-Dof 2 kekalkcprCdstntkfCyynnyslsqPryfCkaCrryWtkGGalrnvPvGggrrknkksss 63 +e+++kcprC+stntkfCyynnysl+qPryfCk+CrryWtkGG+lrnvP+Ggg+rknkksss GSMUA_Achr9P04290_001 38 PEQSIKCPRCESTNTKFCYYNNYSLAQPRYFCKGCRRYWTKGGTLRNVPIGGGCRKNKKSSS 99 7899******************************************************9875 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
ProDom | PD007478 | 1.0E-26 | 36 | 92 | IPR003851 | Zinc finger, Dof-type |
Pfam | PF02701 | 2.3E-33 | 40 | 96 | IPR003851 | Zinc finger, Dof-type |
PROSITE profile | PS50884 | 28.901 | 42 | 96 | IPR003851 | Zinc finger, Dof-type |
PROSITE pattern | PS01361 | 0 | 44 | 80 | IPR003851 | Zinc finger, Dof-type |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 291 aa Download sequence Send to blast |
MKVSSANHQV AMASFPLEEV LGGLTKAEQQ EGKVRPQPEQ SIKCPRCEST NTKFCYYNNY 60 SLAQPRYFCK GCRRYWTKGG TLRNVPIGGG CRKNKKSSSS KRPQDQSFHA NPITSLASSS 120 ALPPFLAYDP NDLILAFAKL QEAHRNPGHL LDDHETALHG DSIPEPGRVP DGLGEPAEFL 180 DFLNTRTTDP TGFHNLHCGY SGIGDVYQGL GLPFDAGLGG ETTSSTAAAA TTVTANQVCC 240 KVLNGSEDDT MSMGMQWQVA EDLNMASDSG RDHQWNEVGS AWHGLINSSL L |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_009416705.1 | 0.0 | PREDICTED: dof zinc finger protein DOF2.1-like | ||||
TrEMBL | M0TXD8 | 0.0 | M0TXD8_MUSAM; Uncharacterized protein | ||||
STRING | GSMUA_Achr9P04290_001 | 0.0 | (Musa acuminata) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Monocots | OGMP4704 | 32 | 63 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT5G60200.1 | 1e-34 | TARGET OF MONOPTEROS 6 |