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PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | GSMUA_Achr9P03270_001 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Zingiberales; Musaceae; Musa
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Family | Dof | ||||||||
Protein Properties | Length: 222aa MW: 24833.8 Da PI: 10.2532 | ||||||||
Description | Dof family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | zf-Dof | 120.9 | 4.6e-38 | 33 | 89 | 6 | 62 |
zf-Dof 6 lkcprCdstntkfCyynnyslsqPryfCkaCrryWtkGGalrnvPvGggrrknkkss 62 l+cprCdstntkfCy+nnyslsqPr+fCk+CrryWt+GGalrnvPvGgg+r+nk+++ GSMUA_Achr9P03270_001 33 LRCPRCDSTNTKFCYFNNYSLSQPRHFCKTCRRYWTRGGALRNVPVGGGCRRNKRNK 89 78****************************************************986 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
ProDom | PD007478 | 7.0E-24 | 17 | 82 | IPR003851 | Zinc finger, Dof-type |
PROSITE profile | PS50884 | 29.674 | 33 | 87 | IPR003851 | Zinc finger, Dof-type |
Pfam | PF02701 | 2.7E-32 | 33 | 87 | IPR003851 | Zinc finger, Dof-type |
PROSITE pattern | PS01361 | 0 | 35 | 71 | IPR003851 | Zinc finger, Dof-type |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 222 aa Download sequence Send to blast |
MVFSSVPVYL DPPNWNQQRS IQRPAAAGGG GELRCPRCDS TNTKFCYFNN YSLSQPRHFC 60 KTCRRYWTRG GALRNVPVGG GCRRNKRNKS TGSSSKSAAT TFTADRQPGP SSSSPDVVTA 120 HPLTATSSSS SFFNTFYLSK ISQSFNLISF PTSSYSRFYL DRERGHVHWE IKLPSNNSCF 180 GCILYISRGM HELPQTQSVM RSEGQGDKHF IWAYAVRFGH GL |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_009416134.1 | 1e-73 | PREDICTED: dof zinc finger protein DOF3.6-like | ||||
TrEMBL | M0TX36 | 1e-164 | M0TX36_MUSAM; Uncharacterized protein | ||||
STRING | GSMUA_Achr9P03270_001 | 1e-165 | (Musa acuminata) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Monocots | OGMP140 | 37 | 367 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT2G37590.1 | 1e-31 | DNA binding with one finger 2.4 |