PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID GSMUA_Achr9P03060_001
Organism
Musa acuminata
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Zingiberales; Musaceae; Musa
Family AP2
Protein Properties Length: 433aa    MW: 47366.8 Da    PI: 6.0673
Description AP2 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
GSMUA_Achr9P03060_001genomeCIRADView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1AP254.53e-17149198155
                    AP2   1 sgykGVrwdkkrgrWvAeIrdpsengkr.krfslgkfgtaeeAakaaiaarkkleg 55 
                            s+y+GV++++++grW+++I+d      + k+++lg f+ta  Aa+a+++a+ k++g
  GSMUA_Achr9P03060_001 149 SQYRGVTFYRRTGRWESHIWD------CgKQVYLGGFDTAHAAARAYDRAAIKFRG 198
                            78*******************......55************************998 PP
2AP242.31.9e-13241291155
                    AP2   1 sgykGVrwdkkrgrWvAeIrdpsengkrkrfslgkfgtaeeAakaaiaarkkleg 55 
                            s+y+GV+ +k  grW+A+   +     +k+++lg f+++ eAa+a+++a+ k +g
  GSMUA_Achr9P03060_001 241 SKYRGVTLHK-CGRWEARMGQF--L-GKKYIYLGLFDSEIEAARAYDKAAIKCNG 291
                            89********.7******5553..2.26**********99**********99776 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF541718.5E-16149207IPR016177DNA-binding domain
PfamPF008471.9E-9149198IPR001471AP2/ERF domain
Gene3DG3DSA:3.30.730.108.3E-17150206IPR001471AP2/ERF domain
SMARTSM003806.3E-31150212IPR001471AP2/ERF domain
PROSITE profilePS5103217.543150206IPR001471AP2/ERF domain
CDDcd000183.80E-23241301No hitNo description
SuperFamilySSF541711.31E-16241300IPR016177DNA-binding domain
PfamPF008474.5E-9241291IPR001471AP2/ERF domain
PROSITE profilePS5103215.172242299IPR001471AP2/ERF domain
Gene3DG3DSA:3.30.730.104.5E-15242299IPR001471AP2/ERF domain
SMARTSM003801.2E-29242305IPR001471AP2/ERF domain
PRINTSPR003671.6E-5243254IPR001471AP2/ERF domain
PRINTSPR003671.6E-5281301IPR001471AP2/ERF domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 433 aa     Download sequence    Send to blast
MGFDLNVVSP GESFIAASNS SEASINEATA ANGEEGTRST NGAATCRFGI FRHPTEPVFD  60
DYDDEIEEES GVWPEPGIVT QQLFPTAEAV TFQPPVAAAS CSSLGWADLS FGKGMVGGAV  120
EATGGKALCH LQQQQQVKKS RRGPRSRSSQ YRGVTFYRRT GRWESHIWDC GKQVYLGGFD  180
TAHAAARAYD RAAIKFRGLG ADINFSLSDY DEDLKQMRNL SKEEFVHILR RQSTGFARGS  240
SKYRGVTLHK CGRWEARMGQ FLGKKYIYLG LFDSEIEAAR AYDKAAIKCN GRVAITNFEP  300
SLYQDEILFE PENEVGFKDV DLSLRISQPN LDSAKRDGSS TSTDFNCGLF GDMETGNAQE  360
RGKDQRQEVG LLVFPNWAWQ MHGPTLLPLV SSAASSGFSS ASTAAVIPPP PAPPPPIIHP  420
VLFPQSASTS YHF
Functional Description ? help Back to Top
Source Description
UniProtProbable transcription factor (By similarity). Involved in spikelet transition (Probable). Together with SNB, controls synergistically inflorescence architecture and floral meristem establishment via the regulation of spatio-temporal expression of B- and E-function floral organ identity genes in the lodicules and of spikelet meristem genes (PubMed:22003982). Prevents lemma and palea elongation as well as grain growth (PubMed:28066457). {ECO:0000250|UniProtKB:P47927, ECO:0000269|PubMed:22003982, ECO:0000269|PubMed:28066457, ECO:0000305|PubMed:26631749}.
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: Target of miR172 microRNA mediated cleavage, particularly during floral organ development. {ECO:0000269|PubMed:22003982, ECO:0000305|PubMed:20017947, ECO:0000305|PubMed:26631749, ECO:0000305|PubMed:28066457}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_018674239.10.0PREDICTED: floral homeotic protein APETALA 2-like isoform X2
SwissprotQ84TB51e-112AP22_ORYSJ; APETALA2-like protein 2
TrEMBLM0TX150.0M0TX15_MUSAM; Uncharacterized protein
STRINGGSMUA_Achr9P03060_0010.0(Musa acuminata)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP24483890
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G28550.39e-98related to AP2.7
Publications ? help Back to Top
  1. Lee DY,An G
    Two AP2 family genes, supernumerary bract (SNB) and Osindeterminate spikelet 1 (OsIDS1), synergistically control inflorescence architecture and floral meristem establishment in rice.
    Plant J., 2012. 69(3): p. 445-61
    [PMID:22003982]
  2. Wang L, et al.
    Coordinated regulation of vegetative and reproductive branching in rice.
    Proc. Natl. Acad. Sci. U.S.A., 2015. 112(50): p. 15504-9
    [PMID:26631749]
  3. Dai Z,Wang J,Zhu M,Miao X,Shi Z
    OsMADS1 Represses microRNA172 in Elongation of Palea/Lemma Development in Rice.
    Front Plant Sci, 2016. 7: p. 1891
    [PMID:28066457]