PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID GSMUA_Achr9P01640_001
Organism
Musa acuminata
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Zingiberales; Musaceae; Musa
Family HSF
Protein Properties Length: 381aa    MW: 43150.3 Da    PI: 6.1039
Description HSF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
GSMUA_Achr9P01640_001genomeCIRADView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HSF_DNA-bind110.41.3e-34181082101
                            HHHHHHHHHCTGGGTTTSEESSSSSEEEES-HHHHHHHTHHHHSTT--HHHHHHHHHHTTEEE---SSBTTTTXTTSEEEEESXXXXX CS
           HSF_DNA-bind   2 FlkklyeiledeelkeliswsengnsfvvldeeefakkvLpkyFkhsnfaSFvRQLnmYgFkkvkdeekkskskekiweFkhksFkkg 89 
                            Fl k+ye+++d+++++++sws + nsfvv+++ +fa ++Lp+yFkh+nf+SF+RQLn+YgF+k+++e+         weF+++ F kg
  GSMUA_Achr9P01640_001  18 FLLKTYEMVDDASTNDVVSWSPSMNSFVVWNPPDFAAHLLPTYFKHNNFSSFIRQLNTYGFRKIDSER---------WEFANEDFIKG 96 
                            9********************999*****************************************999.........*********** PP

                            XXXXXXXXXXXX CS
           HSF_DNA-bind  90 kkellekikrkk 101
                            +k+ll++i r+k
  GSMUA_Achr9P01640_001  97 QKHLLKNIYRRK 108
                            **********98 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:1.10.10.101.2E-3712102IPR011991Winged helix-turn-helix DNA-binding domain
SuperFamilySSF467858.3E-3414107IPR011991Winged helix-turn-helix DNA-binding domain
SMARTSM004152.7E-6014107IPR000232Heat shock factor (HSF)-type, DNA-binding
PRINTSPR000564.7E-191841IPR000232Heat shock factor (HSF)-type, DNA-binding
PfamPF004473.4E-3018107IPR000232Heat shock factor (HSF)-type, DNA-binding
PRINTSPR000564.7E-195668IPR000232Heat shock factor (HSF)-type, DNA-binding
PROSITE patternPS0043405781IPR000232Heat shock factor (HSF)-type, DNA-binding
PRINTSPR000564.7E-196981IPR000232Heat shock factor (HSF)-type, DNA-binding
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 381 aa     Download sequence    Send to blast
METEVGEHGG SAGGPAPFLL KTYEMVDDAS TNDVVSWSPS MNSFVVWNPP DFAAHLLPTY  60
FKHNNFSSFI RQLNTYGFRK IDSERWEFAN EDFIKGQKHL LKNIYRRKPI HSHSRPPGGG  120
LADSERIALE EEIDRLKREK ASLQMAVQKF EQLHSGTKIQ LGDVERRVAD MEKRQLKMVA  180
FLQRVMQNPR LMENLVKMVS SSSIDFSVIH KKRRLPLGAD HCQENSENSL CDDHCSTSKF  240
EFGHALNQDF CDKLRLELCS AYLDSNVVMA STQSSNEDTC SSRPKQINLN QEEANLSEMN  300
NIVTTKENEL NTLISAGARA APLQEAPRTS NETPAVPPVR VNDMFWEQFL TERPGSSDNE  360
EASSGLRAYP GGEQNDERHR K
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5d5u_B2e-22910717129Heat shock factor protein 1
5d5v_B2e-22910717129Heat shock factor protein 1
5d5v_D2e-22910717129Heat shock factor protein 1
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtTranscriptional regulator that specifically binds DNA of heat shock promoter elements (HSE). {ECO:0000250}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_009415941.10.0PREDICTED: heat stress transcription factor A-5
SwissprotQ6K6S51e-112HSFA5_ORYSJ; Heat stress transcription factor A-5
TrEMBLM0TWM10.0M0TWM1_MUSAM; Uncharacterized protein
STRINGGSMUA_Achr9P01640_0010.0(Musa acuminata)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP90003241
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G13980.12e-89HSF family protein
Publications ? help Back to Top
  1. Kikuchi S, et al.
    Collection, mapping, and annotation of over 28,000 cDNA clones from japonica rice.
    Science, 2003. 301(5631): p. 376-9
    [PMID:12869764]