PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID GSMUA_Achr9P00350_001
Organism
Musa acuminata
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Zingiberales; Musaceae; Musa
Family C2H2
Protein Properties Length: 285aa    MW: 31851.8 Da    PI: 8.2823
Description C2H2 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
GSMUA_Achr9P00350_001genomeCIRADView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-C2H218.46e-063456223
                           EETTTTEEESSHHHHHHHHHH.T CS
                zf-C2H2  2 kCpdCgksFsrksnLkrHirt.H 23
                           +CpdCg+ F   ++L+ H+ + H
  GSMUA_Achr9P00350_001 34 TCPDCGEIFVKAESLEIHQAVrH 56
                           8******************9888 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:3.30.160.604.1E-43252IPR013087Zinc finger C2H2-type/integrase DNA-binding domain
PROSITE profilePS501578.8293361IPR007087Zinc finger, C2H2
PROSITE patternPS0002803356IPR007087Zinc finger, C2H2
SuperFamilySSF563991.06E-1958262No hitNo description
Gene3DG3DSA:3.90.228.107.2E-959250IPR012317Poly(ADP-ribose) polymerase, catalytic domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003676Molecular Functionnucleic acid binding
GO:0003950Molecular FunctionNAD+ ADP-ribosyltransferase activity
GO:0046872Molecular Functionmetal ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 285 aa     Download sequence    Send to blast
MHRRRLYGCY ECHMVVDPIS MLSRDSSLGT TICTCPDCGE IFVKAESLEI HQAVRHAVSE  60
LGPEDTSRNI VEIIFQSSWL KKQTPVCKID RILKVHNTNR TLTRFEDYRD SIKIKASKLA  120
RKHPRCTADG NELLRFHCTT FMCSIGLDGA TNLCNSIPKC SLCSIVRDGF KIDSHGRIGT  180
MATSGRAHDA ADNVSDKTAM LVCRVIAGRV KRKQDDLEEY DSAAGMAGIY SNLDELFVFD  240
PKAILPCFVL PLLKLSSNRM TYVASDIAPK TKAVIQLVQK EQPYC
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_009415763.10.0PREDICTED: uncharacterized protein LOC103996567 isoform X1
TrEMBLM0TW920.0M0TW92_MUSAM; Uncharacterized protein
STRINGGSMUA_Achr9P00350_0010.0(Musa acuminata)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP26333880
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G75710.19e-95C2H2-like zinc finger protein