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PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | GSMUA_Achr8P33590_001 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Zingiberales; Musaceae; Musa
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Family | ERF | ||||||||
Protein Properties | Length: 187aa MW: 19481.9 Da PI: 9.1092 | ||||||||
Description | ERF family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | AP2 | 63.5 | 4.5e-20 | 26 | 75 | 2 | 55 |
AP2 2 gykGVrwdkkrgrWvAeIrdpsengkrkrfslgkfgtaeeAakaaiaarkkleg 55 +y+GVr+++ +gr++AeIrdp k+ r++lg+f+taeeAa+a++ a+++++g GSMUA_Achr8P33590_001 26 RYRGVRQRP-WGRYAAEIRDPA---KKCRVWLGTFDTAEEAARAYDTAARRFRG 75 6********.**********84...36*************************98 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
CDD | cd00018 | 5.22E-31 | 25 | 83 | No hit | No description |
PROSITE profile | PS51032 | 24.355 | 26 | 83 | IPR001471 | AP2/ERF domain |
Pfam | PF00847 | 9.5E-14 | 26 | 75 | IPR001471 | AP2/ERF domain |
SuperFamily | SSF54171 | 5.3E-23 | 26 | 84 | IPR016177 | DNA-binding domain |
SMART | SM00380 | 5.3E-39 | 26 | 89 | IPR001471 | AP2/ERF domain |
Gene3D | G3DSA:3.30.730.10 | 6.5E-33 | 26 | 83 | IPR001471 | AP2/ERF domain |
PRINTS | PR00367 | 1.7E-11 | 27 | 38 | IPR001471 | AP2/ERF domain |
PRINTS | PR00367 | 1.7E-11 | 49 | 65 | IPR001471 | AP2/ERF domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0003677 | Molecular Function | DNA binding | ||||
GO:0003700 | Molecular Function | transcription factor activity, sequence-specific DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 187 aa Download sequence Send to blast |
MAPRVKAANG RDGCGGGGGG EWKGARYRGV RQRPWGRYAA EIRDPAKKCR VWLGTFDTAE 60 EAARAYDTAA RRFRGPKAKT NFPCPLDPLG SAPAAPAAVT IAAVHGAGAA ACSSPSVSTV 120 ESSTPSRKPA ALDLEFRHPP ARDLRAPVCG GVESDSDSSS VVDCPGTPTG RIRFELDLNL 180 PPPSEVA |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
2gcc_A | 6e-24 | 23 | 87 | 2 | 67 | ATERF1 |
3gcc_A | 6e-24 | 23 | 87 | 2 | 67 | ATERF1 |
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Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Transcription factor that binds to the GCC-box pathogenesis-related promoter element. Involved in the regulation of gene expression by stress factors and by components of stress signal transduction pathways. Probably acts as a transcriptional repressor and may regulate other AtERFs (By similarity). {ECO:0000250}. |
Regulation -- Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | INDUCTION: Strongly and quickly induced by ethylene. {ECO:0000269|PubMed:10945353}. |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | DQ334409 | 5e-50 | DQ334409.1 Triticum aestivum ethylene-responsive factor-like transcription factor ERFL2a (ERFL2a) mRNA, complete cds. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_009415607.1 | 9e-82 | PREDICTED: ethylene-responsive transcription factor 11-like | ||||
Swissprot | Q9LW49 | 2e-34 | ERF4_NICSY; Ethylene-responsive transcription factor 4 | ||||
TrEMBL | M0TVW1 | 1e-130 | M0TVW1_MUSAM; Uncharacterized protein | ||||
STRING | GSMUA_Achr8P33590_001 | 1e-130 | (Musa acuminata) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Monocots | OGMP103 | 37 | 465 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT5G44210.1 | 3e-18 | erf domain protein 9 |