PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID GSMUA_Achr8P30700_001
Organism
Musa acuminata
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Zingiberales; Musaceae; Musa
Family NF-YA
Protein Properties Length: 317aa    MW: 34523 Da    PI: 10.1347
Description NF-YA family protein
Gene Model
Gene Model ID Type Source Coding Sequence
GSMUA_Achr8P30700_001genomeCIRADView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1CBFB_NFYA105.54.6e-33139195158
              CBFB_NFYA   1 deplYVNaKQyqrIlkRRqkRakleeekkldeksrkpylheSRhkhAlrRpRgsgGrF 58 
                            +ep+YVNaKQy++Il+RRq Rakle+++kl +k+rkpylheSRh hA++R+RgsgGrF
  GSMUA_Achr8P30700_001 139 EEPIYVNAKQYNAILRRRQLRAKLEAQNKL-IKNRKPYLHESRHLHAMKRARGSGGRF 195
                            69****************************.**************************9 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM005211.4E-38137198IPR001289Nuclear transcription factor Y subunit A
PROSITE profilePS5115238.474138198IPR001289Nuclear transcription factor Y subunit A
PfamPF020451.8E-28140195IPR001289Nuclear transcription factor Y subunit A
PRINTSPR006161.3E-23141163IPR001289Nuclear transcription factor Y subunit A
PROSITE patternPS006860143163IPR018362CCAAT-binding factor, conserved site
PRINTSPR006161.3E-23172195IPR001289Nuclear transcription factor Y subunit A
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0016602Cellular ComponentCCAAT-binding factor complex
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 317 aa     Download sequence    Send to blast
MNMDFLGKDG NKVKLLNHSV SEHDSSTQST GQSHQEISGT SEDNVHEQHI SVQSGIDSTL  60
TKSAKDHLKP VISLGASDAA LAPPKWDYSQ SFAPVPYPYA DPYYGGIFAV CGPHAVIQPQ  120
MTGIASPARV PLPLQPAAEE PIYVNAKQYN AILRRRQLRA KLEAQNKLIK NRKPYLHESR  180
HLHAMKRARG SGGRFLNTKQ LQQQQQTQAS AMSGRKQLTG SELRPIGLAA TLIDSETASV  240
STNRSMLAQR DRLGFPLPNL LHSSMGTTSN QGGSSMMSSN SELQVPPMRK EIASATQRPP  300
SQTNAWIPSP SCLLLNA
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
4awl_A4e-22139200263NUCLEAR TRANSCRIPTION FACTOR Y SUBUNIT ALPHA
Search in ModeBase
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_009414802.10.0PREDICTED: nuclear transcription factor Y subunit A-3
RefseqXP_009414804.10.0PREDICTED: nuclear transcription factor Y subunit A-3
RefseqXP_018685611.10.0PREDICTED: nuclear transcription factor Y subunit A-3
RefseqXP_018685612.10.0PREDICTED: nuclear transcription factor Y subunit A-3
TrEMBLM0TV220.0M0TV22_MUSAM; Uncharacterized protein
STRINGGSMUA_Achr8P30700_0010.0(Musa acuminata)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP137338121
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G14020.13e-37nuclear factor Y, subunit A6