PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID GSMUA_Achr8P30300_001
Organism
Musa acuminata
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Zingiberales; Musaceae; Musa
Family C2H2
Protein Properties Length: 386aa    MW: 42369 Da    PI: 9.2968
Description C2H2 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
GSMUA_Achr8P30300_001genomeCIRADView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-C2H219.42.8e-06160182223
                            EETTTTEEESSHHHHHHHHHH.T CS
                zf-C2H2   2 kCpdCgksFsrksnLkrHirt.H 23 
                            +Cp+Cg+ F r+++L+ H+ + H
  GSMUA_Achr8P30300_001 160 SCPHCGEIFVRPESLELHQAVrH 182
                            8******************9888 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS501578.746159187IPR007087Zinc finger, C2H2
PROSITE patternPS000280159182IPR007087Zinc finger, C2H2
SuperFamilySSF563991.25E-20184385No hitNo description
Gene3DG3DSA:3.90.228.104.6E-13185384IPR012317Poly(ADP-ribose) polymerase, catalytic domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003950Molecular FunctionNAD+ ADP-ribosyltransferase activity
GO:0046872Molecular Functionmetal ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 386 aa     Download sequence    Send to blast
MAETGEARRK LERSNRSKKQ EQRRAKKSPA WRALRNLFSC KDQRDARGRK KGKKRDSTSE  60
TSQEATTAAA VNPCNTSSRS LRSPCKDVSG DISTSFASYS SASIVASATA SSSSSSSSSV  120
GGSLTGMHLR RLSGCYECHV MVDPINGPSR DPSMRVSICS CPHCGEIFVR PESLELHQAV  180
RHAVSELGPE DTSRNIIEII FQSSWLKNQT PVCKIDRILK VHNTPKAITR FEDYRDSIKT  240
KADNKLAKKH PRCVADGNEL LRFHCTTLAC SLGFNGSTNL CQSMERCDVC SIIRDGFKLD  300
EAGKVQTMAT SGRAHDMARV SSSDEEKRAM LVCRVIAGRV KKKSQDAVDE FDSVAGSAGT  360
YSNIDELFVF SPKAILPCFV VIYTGF
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_009414851.10.0PREDICTED: uncharacterized protein LOC103995858
RefseqXP_018685605.10.0PREDICTED: uncharacterized protein LOC103995858
TrEMBLM0TUY20.0M0TUY2_MUSAM; Uncharacterized protein
STRINGGSMUA_Achr8P30300_0010.0(Musa acuminata)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP26333880
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G75710.18e-98C2H2-like zinc finger protein