PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID GSMUA_Achr8P30180_001
Organism
Musa acuminata
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Zingiberales; Musaceae; Musa
Family ERF
Protein Properties Length: 312aa    MW: 34105.8 Da    PI: 7.3028
Description ERF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
GSMUA_Achr8P30180_001genomeCIRADView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1AP256.19.3e-184391355
                    AP2  3 ykGVrwdkkrgrWvAeIrdpsengkrkrfslgkfgtaeeAakaaiaarkkleg 55
                           + GVr+++ +gr++AeIrdp++   + r++lg+f+ta+eAa a+++a+++++g
  GSMUA_Achr8P30180_001 43 FLGVRRRP-WGRYAAEIRDPTT---KERHWLGTFDTAQEAAMAYDRAALAMKG 91
                           56******.**********965...5************************987 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM003805.1E-3242105IPR001471AP2/ERF domain
PROSITE profilePS5103220.6534299IPR001471AP2/ERF domain
CDDcd000183.80E-284298No hitNo description
PRINTSPR003679.1E-84354IPR001471AP2/ERF domain
Gene3DG3DSA:3.30.730.107.5E-284398IPR001471AP2/ERF domain
SuperFamilySSF541712.62E-204399IPR016177DNA-binding domain
PfamPF008473.3E-114591IPR001471AP2/ERF domain
PRINTSPR003679.1E-86581IPR001471AP2/ERF domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0010102Biological Processlateral root morphogenesis
GO:0010432Biological Processbract development
GO:0010451Biological Processfloral meristem growth
GO:0010582Biological Processfloral meristem determinacy
GO:0005634Cellular Componentnucleus
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0044212Molecular Functiontranscription regulatory region DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 312 aa     Download sequence    Send to blast
MDFCQGKPYH SSSLSSPSSS SPVAGTSSGE RRGRRKPTEP GRFLGVRRRP WGRYAAEIRD  60
PTTKERHWLG TFDTAQEAAM AYDRAALAMK GTQARTNFVY ADTPLTTFHA VTPFHSQSFI  120
PQPMPPLPGQ PHQLVGAATA IQPSNHSNFS IQSHRHSISA PSRRDVDSLL FRSSRDATNM  180
PAFGSPAEMD MSNDFLFSDD TRSGYLSSIV QESRLRSSRK HSSANRGNSS SSESNAQVLS  240
PSNQDFPCLA EMSKGFWMDE PVWELSACGF PDANDINMDN LGASLPQVSV SVSTSPSVSS  300
LTDVFDLGYP LF
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5wx9_A4e-193398571Ethylene-responsive transcription factor ERF096
Search in ModeBase
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00520DAPTransfer from AT5G18560Download
Motif logo
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_009414869.10.0PREDICTED: ethylene-responsive transcription factor ERF086
TrEMBLM0TUX00.0M0TUX0_MUSAM; Uncharacterized protein
STRINGGSMUA_Achr8P30180_0010.0(Musa acuminata)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP105252838
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G18560.11e-33ERF family protein