PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

GSMUA_Achr8P28050_001

Organism

Musa acuminata

Taxonomic ID

4641

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Zingiberales; Musaceae; Musa

Family

NF-YB

Protein Properties

Length: 157aa MW: 17118.5 Da PI: 7.3459

Description

NF-YB family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
GSMUA_Achr8P28050_001	genome	CIRAD	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	NF-YB	174.3	1.3e-54	29	121	2	94
NF-YB 2 reqdrflPianvsrimkkvlPanakiskdaketvqecvsefisfvtseasdkcqrekrktingddllwalatlGfedyveplkvylkk 89 reqdrflPian++rim+k++P+n+ki+kdake+vqecvsefisf+tseasdkcqrekrktingddllwa++tlGfe+yveplk+yl+ GSMUA_Achr8P28050_001 29 REQDRFLPIANIGRIMRKAIPENGKIAKDAKESVQECVSEFISFITSEASDKCQREKRKTINGDDLLWAMGTLGFEEYVEPLKLYLQL 116 89************************************************************************************ PP NF-YB 90 yrele 94 yre++ GSMUA_Achr8P28050_001 117 YREVN 121 *85 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
Gene3D	G3DSA:1.10.20.10	5.8E-50	26	121	IPR009072	Histone-fold
SuperFamily	SSF47113	2.02E-37	31	120	IPR009072	Histone-fold
Pfam	PF00808	2.1E-28	34	98	IPR003958	Transcription factor CBF/NF-Y/archaeal histone domain
PRINTS	PR00615	1.0E-20	62	80	No hit	No description
PROSITE pattern	PS00685	0	65	81	IPR003956	Transcription factor, NFYB/HAP3, conserved site
PRINTS	PR00615	1.0E-20	81	99	No hit	No description
PRINTS	PR00615	1.0E-20	100	118	No hit	No description

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0006355	Biological Process	regulation of transcription, DNA-templated
GO:0005634	Cellular Component	nucleus
GO:0043565	Molecular Function	sequence-specific DNA binding
GO:0046982	Molecular Function	protein heterodimerization activity

Sequence ? help Back to Top
Protein Sequence Length: 157 aa Download sequence Send to blast
MAESGVPGSP ESGHSGDHGG GGGGGASARE QDRFLPIANI GRIMRKAIPE NGKIAKDAKE 60 SVQECVSEFI SFITSEASDK CQREKRKTIN GDDLLWAMGT LGFEEYVEPL KLYLQLYREV 120 NLLPSLPYFN TGTPFCRAVL IGGIASLFLR LLLRNRT

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
1n1j_A	9e-49	27	119	1	93	NF-YB
4awl_B	1e-48	27	119	2	94	NUCLEAR TRANSCRIPTION FACTOR Y SUBUNIT BETA
4csr_A	1e-48	27	119	2	94	NUCLEAR TRANSCRIPTION FACTOR Y SUBUNIT BETA
Search in ModeBase

Functional Description ? help Back to Top
Source	Description
UniProt	Component of the NF-Y/HAP transcription factor complex. The NF-Y complex stimulates the transcription of various genes by recognizing and binding to a CCAAT motif in promoters.

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_009415144.1	2e-83	PREDICTED: nuclear transcription factor Y subunit B-4-like
Refseq	XP_009415145.1	2e-83	PREDICTED: nuclear transcription factor Y subunit B-4-like
Swissprot	O23310	3e-58	NFYB3_ARATH; Nuclear transcription factor Y subunit B-3
TrEMBL	M0TUA8	1e-111	M0TUA8_MUSAM; Uncharacterized protein
STRING	GSMUA_Achr8P28050_001	1e-112	(Musa acuminata)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Monocots	OGMP201	38	331

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT4G14540.1	3e-57	nuclear factor Y, subunit B3

Publications ? help Back to Top
Han X, et al. Overexpression of the poplar NF-YB7 transcription factor confers drought tolerance and improves water-use efficiency in Arabidopsis. J. Exp. Bot., 2013. 64(14): p. 4589-601 [PMID:24006421] Hwang YH, et al. Functional conservation of rice OsNF-YB/YC and Arabidopsis AtNF-YB/YC proteins in the regulation of flowering time. Plant Cell Rep., 2016. 35(4): p. 857-65 [PMID:26754793] Hossain MA, et al. Identification of Novel Components of the Unfolded Protein Response in Arabidopsis. Front Plant Sci, 2016. 7: p. 650 [PMID:27242851] Zhao H, et al. The Arabidopsis thaliana Nuclear Factor Y Transcription Factors. Front Plant Sci, 2016. 7: p. 2045 [PMID:28119722]