PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID GSMUA_Achr8P27170_001
Organism
Musa acuminata
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Zingiberales; Musaceae; Musa
Family WOX
Protein Properties Length: 447aa    MW: 48031 Da    PI: 8.9784
Description WOX family protein
Gene Model
Gene Model ID Type Source Coding Sequence
GSMUA_Achr8P27170_001genomeCIRADView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Homeobox55.41.1e-1749109257
                            T--SS--HHHHHHHHHHHHH.SSS--HHHHHHHHHHC....TS-HHHHHHHHHHHHHHHHC CS
               Homeobox   2 rkRttftkeqleeLeelFek.nrypsaeereeLAkkl....gLterqVkvWFqNrRakekk 57 
                            ++R+++++eq+++Le+ F++   +p ++e++++ ++l    ++ +++V++WFqNr+ + k+
  GSMUA_Achr8P27170_001  49 KPRWNPKPEQIRILEAIFNSgMVNPPRDEIRRIRAQLqeygQVGDANVFYWFQNRKSRSKN 109
                            89*****************99*************************************995 PP
2Wus_type_Homeobox112.13e-3648111265
      Wus_type_Homeobox   2 artRWtPtpeQikiLeelyksGlrtPnkeeiqritaeLeeyGkiedkNVfyWFQNrkaRerqkq 65 
                            +++RW+P+peQi+iLe++++sG+++P+++ei+ri+a+L+eyG+++d+NVfyWFQNrk+R+++kq
  GSMUA_Achr8P27170_001  48 PKPRWNPKPEQIRILEAIFNSGMVNPPRDEIRRIRAQLQEYGQVGDANVFYWFQNRKSRSKNKQ 111
                            689***********************************************************97 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF466893.12E-1244115IPR009057Homeodomain-like
PROSITE profilePS5007110.5645110IPR001356Homeobox domain
SMARTSM003891.7E-947114IPR001356Homeobox domain
CDDcd000866.37E-948111No hitNo description
Gene3DG3DSA:1.10.10.605.2E-748114IPR009057Homeodomain-like
PfamPF000462.6E-1549108IPR001356Homeobox domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0008284Biological Processpositive regulation of cell proliferation
GO:0009735Biological Processresponse to cytokinin
GO:0009793Biological Processembryo development ending in seed dormancy
GO:0010075Biological Processregulation of meristem growth
GO:0005634Cellular Componentnucleus
GO:0005737Cellular Componentcytoplasm
GO:0044212Molecular Functiontranscription regulatory region DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 447 aa     Download sequence    Send to blast
MASSNRHWPS MFKSKPCNAH HHQWQHDINS CHQKTPYASG FEERSPEPKP RWNPKPEQIR  60
ILEAIFNSGM VNPPRDEIRR IRAQLQEYGQ VGDANVFYWF QNRKSRSKNK QRHLQATRSQ  120
TQPSSAAPSP PPVATKPTST ATSSSSSSSE QSTGSDKTQL PVASMGGALT SMVHSAAPLP  180
VTSVNPMYLH GSLELGGESF LLQGPQGYCF PAAELTGIIG VPEHGTGVHP GPWGDLMGFK  240
SGEDDAKVTV QLHHLYGTGS SSAPSVATTV TSANASGGGG ATAGRGLYAY VVEKIERMVI  300
GRVHGIEIRQ VLHQHVIPSS SNHNYASIYI IRPFNTFIPP MSSSSSATVM GVGGSGGAAA  360
ARSTVFINEV AFEVAAGPVN VREAFGHEAI LIDHSGRPVL TDEWGVTIHP LRHGASYYLV  420
LSLSLSLYFM LLWISSSSSS NAVVMQV
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_018685762.11e-177PREDICTED: WUSCHEL-related homeobox 9-like
TrEMBLM0TU200.0M0TU20_MUSAM; Uncharacterized protein
STRINGGSMUA_Achr8P27170_0010.0(Musa acuminata)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP26663470
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G33880.12e-60homeobox-3