PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID GSMUA_Achr8P26530_001
Organism
Musa acuminata
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Zingiberales; Musaceae; Musa
Family GRF
Protein Properties Length: 1434aa    MW: 156155 Da    PI: 6.9251
Description GRF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
GSMUA_Achr8P26530_001genomeCIRADView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1WRC74.71e-23219263145
                    WRC   1 daepgrCrRtDGKkWRCsrrvlegkklCErHlhrgrsrsrkskee 45 
                            d+epgrCrRtDGKkWRCsr++++++k+CErH++rgr+rsrk++e 
  GSMUA_Achr8P26530_001 219 DPEPGRCRRTDGKKWRCSRDAVADQKYCERHINRGRHRSRKHVEG 263
                            79****************************************986 PP
2QLQ57.44.5e-20149185137
                    QLQ   1 saFTaaQlqlLksQilAyKyLaanqPvPpeLlqaiqk 37 
                            ++FT++Q+ +L++Q+l+yKyL+an+P+P+ Ll +i++
  GSMUA_Achr8P26530_001 149 GPFTPSQWLELEHQALIYKYLVANVPIPATLLIPIKR 185
                            59********************************985 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM009512.4E-12149185IPR014978Glutamine-Leucine-Glutamine, QLQ
PROSITE profilePS5166622.568150185IPR014978Glutamine-Leucine-Glutamine, QLQ
PfamPF088802.3E-14150183IPR014978Glutamine-Leucine-Glutamine, QLQ
PROSITE profilePS5166725.08219263IPR014977WRC domain
PfamPF088796.5E-20220262IPR014977WRC domain
PfamPF014572.2E-886461184IPR001577Peptidase M8, leishmanolysin
Gene3DG3DSA:3.10.170.201.5E-47698888No hitNo description
SuperFamilySSF554862.82E-1287001188No hitNo description
PRINTSPR007824.3E-9833862IPR001577Peptidase M8, leishmanolysin
Gene3DG3DSA:3.90.132.101.9E-358891021No hitNo description
PRINTSPR007824.3E-99861015IPR001577Peptidase M8, leishmanolysin
Gene3DG3DSA:2.10.55.107.3E-1910221085No hitNo description
Gene3DG3DSA:2.30.34.101.2E-810871182No hitNo description
PROSITE patternPS00022012081219IPR013032EGF-like, conserved site
PROSITE profilePS5002611.55312201252IPR000742EGF-like domain
PfamPF079743.7E-512241251IPR013111EGF-like domain, extracellular
PROSITE patternPS00022012401251IPR013032EGF-like, conserved site
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0006508Biological Processproteolysis
GO:0007155Biological Processcell adhesion
GO:0005634Cellular Componentnucleus
GO:0016020Cellular Componentmembrane
GO:0004222Molecular Functionmetalloendopeptidase activity
GO:0005515Molecular Functionprotein binding
GO:0005524Molecular FunctionATP binding
Sequence ? help Back to Top
Protein Sequence    Length: 1434 aa     Download sequence    Send to blast
MDLGGVLGMD ALVGASTESG NLFSSSLLSQ ETEVGRQRGV FLSAFHKHER PAEPADYDLR  60
SFKMARSEAL VSASTKAAHF LHRSNSLPLL PDGEQMLSFS STSKQSDMAI ASDGTLPYYN  120
HPSAPSSTQS LYSGSSNANM QGVLARVRGP FTPSQWLELE HQALIYKYLV ANVPIPATLL  180
IPIKRSLGAS GFPPLSAGSF ASGTLGWGPF HLGYSGNADP EPGRCRRTDG KKWRCSRDAV  240
ADQKYCERHI NRGRHRSRKH VEGQTGHAAK AVSVITSSQS ASAVPDAISS GSLTNSQRQS  300
KSLQSNNADP FHAQSNGKTS SCIHLTFSSL GDAMVLINKE DQNDPSQNSK GLSVLSPVNQ  360
NSMNNLFPVS KQHNPFEETS SGRDFGFIST DSLLNPPSSS FSDNISFIPN SKPEVHSHPL  420
RHFIDVCPKT QSDRSTVTWP DVEDTQLNKT QLAISIPMAC SDFSSSSSSN YDKLPLSPLK  480
LSREYDLVNT GLGVGLLNEV CHQQVCWKPV SWEASMAGPL GEVLTSTNPT PKNQSKNCSS  540
SSSLNLLSDG WDSGCQLESS PTGVLQKASF GSLSSSTGSS PRAENLKIHE STGSLCDDLL  600
GSTIVNASTI VLLLVIFGGT GAKPQDSKPP FWQDTEAGEN VVHLTHSCIH DEILHRRRRP  660
GRKEYSVTPQ VYHESSLSRS HHHGGRALLE VSSVSPLQKD TKQPIRIYLN YDAVGHSSDR  720
DCRNVGDLVK LGEPPATSIS RTPVCNPHGD RPVFADCWYN CTVEDISGED KKQRLRKALG  780
QTAEWFRRAL AVEPVKGNLR LSGYSACGQD GGVQLPHEYI EDGVADSDLV LLVTTRPTTG  840
NTLAWAVACE RDQWGRAIAG HVNVAPRHLT AEAETLLSAT LIHEVMHVLG FDPHAFAHFR  900
DERKRRRSQV TVQVMDEKLG RMVTRIVLPR VVMRARYHYG AFSENFTGLE LEDGGGRGTS  960
GSHWEKRLLM NEIMTGSVDT RSVVSKMTLA LLEDSGWYQA NYSMADRLDW GRNQGTEFVT  1020
SPCNHWKGAY HCNTTQLSGC TYNREAEGYC PIVSYNGDLP KWAQYFPQAN KGGQSSLADY  1080
CTYFVAYSDG SCTDTNSARA PDRALGEVRG SNSRCMASSL VRTGFVRGSM TQGNGCYQHR  1140
CMNNTLEIAV DGIWRMCPEA GGPVQFPGFN GELICPAYHE LCSSTPVPIN GRCPGSCSFN  1200
GDCINGECHC FLGFHGNDCS RRSCPGNCSG HGTCHPNGIC ECESGRTGID CSTAICDEQC  1260
SLHGGVCDNG VCEFRCSDYA GYTCQNSSSL LPSLSICSDV LARDVFGQHC APSEPSILQQ  1320
LEAAVVMPNY NRLLPGGRTL FNILDNGYCA AAAKRLACWI SIQRCDEDGD NRLRVCHSAC  1380
RSYNAACGAG LDCSDQTLFS SEEEKDGQCT GYGEIRPWWI RRFGNLYLQS QRKL
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1lml_A8e-39760111642391LEISHMANOLYSIN
Search in ModeBase
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1902906RKRRR
2902907RKRRRS
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_009415312.10.0PREDICTED: leishmanolysin-like peptidase
TrEMBLM0TTV60.0M0TTV6_MUSAM; Uncharacterized protein
STRINGGSMUA_Achr8P26530_0010.0(Musa acuminata)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G22840.17e-69growth-regulating factor 1