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PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | GSMUA_Achr8P24420_001 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Zingiberales; Musaceae; Musa
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Family | C2H2 | ||||||||
Protein Properties | Length: 238aa MW: 25716.7 Da PI: 5.7899 | ||||||||
Description | C2H2 family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | zf-C2H2 | 15 | 7e-05 | 75 | 94 | 2 | 21 |
EETTTTEEESSHHHHHHHHH CS zf-C2H2 2 kCpdCgksFsrksnLkrHir 21 +Cp CgksF++ +L H+r GSMUA_Achr8P24420_001 75 TCPECGKSFPSDKSLFGHLR 94 6*****************98 PP | |||||||
2 | zf-C2H2 | 14.9 | 7.5e-05 | 152 | 174 | 1 | 23 |
EEETTTTEEESSHHHHHHHHHHT CS zf-C2H2 1 ykCpdCgksFsrksnLkrHirtH 23 y+C+ C+k+Fs++ L H +H GSMUA_Achr8P24420_001 152 YRCSVCSKTFSSHQALGGHRASH 174 9***************9999888 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SuperFamily | SSF57667 | 1.88E-9 | 74 | 96 | No hit | No description |
PROSITE profile | PS50157 | 10.471 | 74 | 101 | IPR007087 | Zinc finger, C2H2 |
SMART | SM00355 | 0.0085 | 74 | 96 | IPR015880 | Zinc finger, C2H2-like |
Gene3D | G3DSA:3.30.160.60 | 3.4E-4 | 75 | 96 | IPR013087 | Zinc finger C2H2-type/integrase DNA-binding domain |
Pfam | PF13912 | 4.5E-8 | 76 | 98 | IPR007087 | Zinc finger, C2H2 |
PROSITE pattern | PS00028 | 0 | 76 | 96 | IPR007087 | Zinc finger, C2H2 |
SuperFamily | SSF57667 | 1.88E-9 | 147 | 174 | No hit | No description |
Pfam | PF13912 | 1.5E-10 | 151 | 176 | IPR007087 | Zinc finger, C2H2 |
PROSITE profile | PS50157 | 11.094 | 152 | 179 | IPR007087 | Zinc finger, C2H2 |
SMART | SM00355 | 0.0069 | 152 | 174 | IPR015880 | Zinc finger, C2H2-like |
PROSITE pattern | PS00028 | 0 | 154 | 174 | IPR007087 | Zinc finger, C2H2 |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0003676 | Molecular Function | nucleic acid binding | ||||
GO:0046872 | Molecular Function | metal ion binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 238 aa Download sequence Send to blast |
MGARLVEGGS YCDTEDAALG ADNSLGNRVE CAEEPGKAVA QEVASSRCGD DEESVSEAGA 60 AAAEDDGSSR RRHATCPECG KSFPSDKSLF GHLRCHPERD YRGVNPPPEA RRKSGASPAA 120 KRPSAKRGRQ RKATEQVVLA NEPGTSDRGR RYRCSVCSKT FSSHQALGGH RASHNKIRSH 180 HHPEEEEEKE EEQEEAAAAT TTSNHKREQQ EAEADKGGSH GLLDFDLNEA PRLGEEES |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_009415721.1 | 1e-141 | PREDICTED: zinc finger protein ZAT2-like | ||||
TrEMBL | M0TT95 | 1e-170 | M0TT95_MUSAM; Uncharacterized protein | ||||
STRING | GSMUA_Achr8P24420_001 | 1e-171 | (Musa acuminata) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Monocots | OGMP11612 | 21 | 30 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT4G35280.1 | 2e-24 | C2H2-like zinc finger protein |