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Plant Transcription
Factor Database
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Transcription Factor Information
Basic
Information? help
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TF ID |
GSMUA_Achr8P23650_001 |
Organism |
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Taxonomic ID |
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Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Zingiberales; Musaceae; Musa
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Family |
Trihelix |
Protein Properties |
Length: 341aa MW: 37314.2 Da PI: 7.2456 |
Description |
Trihelix family protein |
Gene Model |
Gene Model ID |
Type |
Source |
Coding Sequence |
GSMUA_Achr8P23650_001 | genome | CIRAD | View CDS |
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Signature Domain? help Back to Top |
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No. |
Domain |
Score |
E-value |
Start |
End |
HMM Start |
HMM End |
1 | trihelix | 53.9 | 4.8e-17 | 77 | 166 | 1 | 86 |
trihelix 1 rWtkqevlaLiearremeerlrrgklkkplWeevskkm.rergferspk...qCkekwenlnkrykkikegekkrtsessstcpyfdq 84
+W++ + aLi+a e+ +l+rg+lk+++W+ev++++ ++ g+++ pk qCk++++ l+k+yk +k ++ + +++ ++p+f++
GSMUA_Achr8P23650_001 77 CWSDGATSALIDAWGERYLELSRGNLKQKQWQEVADAVtSRDGYTKAPKtdvQCKNRIDTLKKKYKIEKSKISSSAGGATPSWPFFHR 164
7*************************************878899876643339*********************9999********** PP
trihelix 85 le 86
l+
GSMUA_Achr8P23650_001 165 LD 166
97 PP
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Sequence ? help Back to Top |
Protein Sequence Length: 341 aa
Download sequence Send
to blast |
MEDDDDAQSP SRSLSQSPSP PPVSVVPPSS SPSASPHQPN GRIDEPVTVA AAPQHAVPIR 60 QLRASPGPAS GGGREDCWSD GATSALIDAW GERYLELSRG NLKQKQWQEV ADAVTSRDGY 120 TKAPKTDVQC KNRIDTLKKK YKIEKSKISS SAGGATPSWP FFHRLDLLLG PTHKPAPPPP 180 SSTIPAGVRS SPALASKSAG SSADSSDGFP PPPPKEANGK RLHQEPVEEE GEEQRTADLR 240 ELAQAILKFG EVYERVESSK LRQAMEMEKQ RLEFTRELEL QRMEFLMKTQ MELSQLRSHH 300 HGNSRKRKFD DAGGSSNHHH HHRNHDDNNN SSNSNISGND G
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Best hit in Arabidopsis thaliana ? help
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Hit ID |
E-value |
Description |
AT3G14180.1 | 6e-37 | sequence-specific DNA binding transcription factors |