PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID GSMUA_Achr8P22220_001
Organism
Musa acuminata
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Zingiberales; Musaceae; Musa
Family GeBP
Protein Properties Length: 431aa    MW: 46986.3 Da    PI: 4.7021
Description GeBP family protein
Gene Model
Gene Model ID Type Source Coding Sequence
GSMUA_Achr8P22220_001genomeCIRADView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1DUF57399.23.9e-31148247297
                 DUF573   2 lfqrlwseeDeivlLqGlidfkaktgk..spsd.didafyefvkksisfkvsksqlveKirrLKkKfkkkvkk.aksgkepsfskehd 85 
                            lfqrlw++e ei +Lq + +f++++g+   +++ d+  fye +kk+ +f+++k+ql+eK+rrLKkK++++v + ++ gk+++f+++h+
  GSMUA_Achr8P22220_001 148 LFQRLWTDEEEIKILQEFFEFTSRRGTtfASHQyDTGPFYEEIKKQFQFEFTKNQLIEKLRRLKKKYRNCVGRmRSVGKDFAFKSAHE 235
                            79************************99877778***************************************7788*********** PP

                 DUF573  86 qkifelskkiWg 97 
                            + i+++++kiW 
  GSMUA_Achr8P22220_001 236 RAIYDIARKIWS 247
                            ***********6 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF045042.0E-30149247IPR007592Protein of unknown function DUF573
Sequence ? help Back to Top
Protein Sequence    Length: 431 aa     Download sequence    Send to blast
MPTAEEAEQE RAVFDDEDDV SSDSDDSDDD EGEATAPPPS LQPQAAPTAV FSEAVSDLNP  60
SAPSHDAANP NPNPNPSPTF SDASACAPPQ NGAIPVQVLP VAPASAPSFD AALFTPSSTS  120
IHVSAPVSSA SEERRSLSVV AFDDSRRLFQ RLWTDEEEIK ILQEFFEFTS RRGTTFASHQ  180
YDTGPFYEEI KKQFQFEFTK NQLIEKLRRL KKKYRNCVGR MRSVGKDFAF KSAHERAIYD  240
IARKIWSAST KRDYESDDED LNTPSNTISN EIITVPINDG SLSCDRKMSR SRRRLRRRMA  300
EEAAATDAAA AAVGGVVVDN SSTVLHTPLA LESGIPDIIK ETVKNCLSPL FKELINSAAG  360
GMLGPGLNSG ASPLSLLPLS LGGGSSAAPG IAVDDKWRKQ QILELEVYLK RIELVREHIN  420
STLEELKSAR S
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_009414163.10.0PREDICTED: probable transcription factor At3g04930
TrEMBLM0TSM50.0M0TSM5_MUSAM; Uncharacterized protein
STRINGGSMUA_Achr8P22220_0010.0(Musa acuminata)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP97437123
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G28040.12e-46DNA-binding storekeeper protein-related transcriptional regulator