PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | GSMUA_Achr8P21470_001 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Zingiberales; Musaceae; Musa
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Family | NAC | ||||||||
Protein Properties | Length: 516aa MW: 57515.2 Da PI: 8.6797 | ||||||||
Description | NAC family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | NAM | 177.5 | 3.6e-55 | 16 | 143 | 1 | 129 |
NAM 1 lppGfrFhPtdeelvveyLkkkvegkkleleevikevdiykvePwdLpkkvkaeekewyfFskrdkkyatgkrknratksgyWkatgk 88 lppGfrFhPtdee++++yL++kv++ +++ +++ +vd++k+ePwdLp k+k +ek++yfF+++d+ky+tg r+nrat++gyWkatgk GSMUA_Achr8P21470_001 16 LPPGFRFHPTDEEIITHYLTPKVTDLGFTA-KAMGDVDLNKCEPWDLPGKAKMGEKDLYFFCHKDRKYPTGMRTNRATEAGYWKATGK 102 79*************************999.88***************999999********************************** PP NAM 89 dkevlskkgelvglkktLvfykgrapkgektdWvmheyrle 129 dke+++ kg lvg+kktLvfy+grapkg+kt+Wvmhe+rle GSMUA_Achr8P21470_001 103 DKEIYRDKGVLVGMKKTLVFYQGRAPKGQKTNWVMHEFRLE 143 **************************************985 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SuperFamily | SSF101941 | 6.67E-63 | 13 | 168 | IPR003441 | NAC domain |
PROSITE profile | PS51005 | 58.108 | 16 | 167 | IPR003441 | NAC domain |
Pfam | PF02365 | 4.5E-28 | 17 | 142 | IPR003441 | NAC domain |
Gene3D | G3DSA:3.30.420.10 | 5.9E-28 | 267 | 439 | IPR012337 | Ribonuclease H-like domain |
SuperFamily | SSF53098 | 2.19E-27 | 270 | 439 | IPR012337 | Ribonuclease H-like domain |
SMART | SM00479 | 6.7E-25 | 272 | 444 | IPR013520 | Exonuclease, RNase T/DNA polymerase III |
CDD | cd06127 | 1.96E-27 | 274 | 436 | No hit | No description |
Pfam | PF00929 | 8.2E-22 | 274 | 435 | IPR013520 | Exonuclease, RNase T/DNA polymerase III |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 516 aa Download sequence Send to blast |
MVDVSVLNDV DDCIDLPPGF RFHPTDEEII THYLTPKVTD LGFTAKAMGD VDLNKCEPWD 60 LPGKAKMGEK DLYFFCHKDR KYPTGMRTNR ATEAGYWKAT GKDKEIYRDK GVLVGMKKTL 120 VFYQGRAPKG QKTNWVMHEF RLEGKHSLPN LPNSAKDEWV VCRVFHKNIG LKKSPLGDDL 180 MDLATLPPPF MDPPRMESNF TGLPPGVEDP SAYCTLLGST DVGYLHQDEA MMRAFAAANN 240 DVSAATRKPC KVEQFTDISS SAIRRQQIKM GEIVFFDVET TAPAGEGRRL QLLEFGAMLV 300 CPRKLTEVES YCTLIRPADL SAVATKRCSG ITREAVAAAP TFEEVADRIF GILNGTVWAG 360 HNIQRFDCHR IKEAFADIGR PPPEPKGLID SLAILTHGFG RRAGDLKMAT LASYFGLGQQ 420 KHRSLDDVRM NLEVFKNCAT VLLLESSLPQ VFPNKSLGNL GMVTRSRANG RSCGVEACRK 480 SPQPASPVIH RASPYKKDNI RKVNQFVMRP YLHFTI |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
1ut4_A | 9e-49 | 14 | 173 | 15 | 171 | NO APICAL MERISTEM PROTEIN |
1ut4_B | 9e-49 | 14 | 173 | 15 | 171 | NO APICAL MERISTEM PROTEIN |
1ut7_A | 9e-49 | 14 | 173 | 15 | 171 | NO APICAL MERISTEM PROTEIN |
1ut7_B | 9e-49 | 14 | 173 | 15 | 171 | NO APICAL MERISTEM PROTEIN |
4dul_A | 9e-49 | 14 | 173 | 15 | 171 | NAC domain-containing protein 19 |
4dul_B | 9e-49 | 14 | 173 | 15 | 171 | NAC domain-containing protein 19 |
Search in ModeBase |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Binds to the promoter regions of genes involved in chlorophyll catabolic processes, such as NYC1, SGR1, SGR2 and PAO. {ECO:0000269|PubMed:27021284}. |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_009414240.1 | 0.0 | PREDICTED: NAC domain-containing protein 79-like | ||||
Refseq | XP_018686044.1 | 0.0 | PREDICTED: NAC domain-containing protein 79-like | ||||
Refseq | XP_018686045.1 | 0.0 | PREDICTED: NAC domain-containing protein 79-like | ||||
Swissprot | Q9FK44 | 8e-92 | NAC87_ARATH; NAC domain-containing protein 87 | ||||
TrEMBL | M0TSF0 | 0.0 | M0TSF0_MUSAM; Uncharacterized protein | ||||
STRING | GSMUA_Achr8P21470_001 | 0.0 | (Musa acuminata) |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT5G18270.2 | 1e-93 | Arabidopsis NAC domain containing protein 87 |
Publications ? help Back to Top | |||
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