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PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | GSMUA_Achr8P20460_001 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Zingiberales; Musaceae; Musa
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Family | CPP | ||||||||
Protein Properties | Length: 805aa MW: 87974.8 Da PI: 6.6922 | ||||||||
Description | CPP family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | TCR | 51.9 | 1.5e-16 | 486 | 523 | 3 | 40 |
TCR 3 kkgCnCkkskClkkYCeCfaagkkCseeCkCedCkNke 40 +k+CnCkkskClk+YCeCfaag++Cse C+C++C+Nk GSMUA_Achr8P20460_001 486 CKRCNCKKSKCLKLYCECFAAGVYCSEPCSCQGCFNKP 523 79**********************************96 PP | |||||||
2 | TCR | 50.6 | 3.9e-16 | 570 | 608 | 1 | 39 |
TCR 1 kekkgCnCkkskClkkYCeCfaagkkCseeCkCedCkNk 39 ++k+gCnCkks+ClkkYCeC++ g+ Cs C+Ce+CkN GSMUA_Achr8P20460_001 570 RHKRGCNCKKSNCLKKYCECYQGGVGCSIGCRCEGCKNL 608 589***********************************5 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SMART | SM01114 | 2.5E-18 | 484 | 525 | IPR033467 | Tesmin/TSO1-like CXC domain |
PROSITE profile | PS51634 | 37.017 | 485 | 610 | IPR005172 | CRC domain |
Pfam | PF03638 | 5.0E-12 | 487 | 522 | IPR005172 | CRC domain |
SMART | SM01114 | 1.1E-16 | 570 | 611 | IPR033467 | Tesmin/TSO1-like CXC domain |
Pfam | PF03638 | 2.7E-11 | 572 | 607 | IPR005172 | CRC domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0009934 | Biological Process | regulation of meristem structural organization | ||||
GO:0048444 | Biological Process | floral organ morphogenesis | ||||
GO:0051302 | Biological Process | regulation of cell division | ||||
GO:0005634 | Cellular Component | nucleus |
Sequence ? help Back to Top |
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Protein Sequence Length: 805 aa Download sequence Send to blast |
MDTPERAKIA GTPLSKFEDS PIYNFINNLS PIQPVKSIDS VPIAHTHQPL NFASLSSIFS 60 SPHDNPPRET RFLTRHPFTD YFKQENFSDN VGESSLCPEV SDAGRPSGFT SSSQENCTMT 120 CSLNEATVDP PDECPALPST FPQSTQYYSG SPDHNVEPCL GIKMDLKLDV GHTPVEFHFV 180 QNGVERRKVL FAMEDGVQEN LPLELNKDKG VGCVWESLIP DDGQSLLIFD SSTESEAHKG 240 VSEKAVDNDG HSIVSLLSNC TENADHLQKT KPDISHGPCV HNVNQDPSQN CSKVFEKEDE 300 TDHATKMLSD MCHDQVDSHQ QRGMRRRCLV FEVASVSKRN MYSDSKLNPL TSLSFKGKSV 360 CDTKNLKPEI RESLYALPGI GLHLNALATT SKDRMVNKET LASEKQIISN PCSVGSLTST 420 TAGRNSLRKS SAVEKDLCPS GSEVDLQIVS DDAPKDATPN ICEELSQGSP KKKRRKSGNG 480 GESDGCKRCN CKKSKCLKLY CECFAAGVYC SEPCSCQGCF NKPIHEETVL ATRRQIESRN 540 PLAFAPKVIR TSESGLEMGD DDKKTPASAR HKRGCNCKKS NCLKKYCECY QGGVGCSIGC 600 RCEGCKNLFG RKDGFLPRFE ELEQAEKEAN ACEKENESPG DDQQNTSIQI DEHHSSGHIL 660 PITPYQSCRL SVELPFSSIA SSTTSTKLSI GRSPALYGSH MLRKCEMVLP PPKLENNVST 720 VVEDDTPAIL RPTVSPTTTG IRIASPNQKR VSPPHGGVGL SPPSRKGCRK LILRSIPSFP 780 PLGSDVSAEH PVNYSNSSFG SSTVI |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
5fd3_A | 1e-17 | 489 | 608 | 14 | 121 | Protein lin-54 homolog |
5fd3_B | 1e-17 | 489 | 608 | 14 | 121 | Protein lin-54 homolog |
Search in ModeBase |
Nucleic Localization Signal ? help Back to Top | |||
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No. | Start | End | Sequence |
1 | 470 | 474 | KKKRR |
2 | 470 | 475 | KKKRRK |
3 | 471 | 475 | KKRRK |
Binding Motif ? help Back to Top | |||
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Motif ID | Method | Source | Motif file |
MP00624 | PBM | Transfer from PK22848.1 | Download |
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Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | Retrieve |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_009413895.1 | 0.0 | PREDICTED: protein tesmin/TSO1-like CXC 2 | ||||
Refseq | XP_009413896.1 | 0.0 | PREDICTED: protein tesmin/TSO1-like CXC 2 | ||||
TrEMBL | M0TS49 | 0.0 | M0TS49_MUSAM; Uncharacterized protein | ||||
STRING | GSMUA_Achr8P20460_001 | 0.0 | (Musa acuminata) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Monocots | OGMP6147 | 34 | 47 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT4G14770.1 | 1e-124 | TESMIN/TSO1-like CXC 2 |