PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Home  TFext  BLAST  Prediction  Download  Help  About  Links  PlantRegMap
(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID GSMUA_Achr8P19240_001
Organism
Musa acuminata
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Zingiberales; Musaceae; Musa
Family C2H2
Protein Properties Length: 422aa    MW: 45081.8 Da    PI: 9.1432
Description C2H2 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
GSMUA_Achr8P19240_001genomeCIRADView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-C2H215.16.6e-05168190223
                            EETTTTEEESSHHHHHHHHHH.T CS
                zf-C2H2   2 kCpdCgksFsrksnLkrHirt.H 23 
                             C+ Cg++F+ +++L+ H  + H
  GSMUA_Achr8P19240_001 168 ACSECGEVFTKPDSLELHRVLrH 190
                            6*****************97766 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE patternPS000280167190IPR007087Zinc finger, C2H2
PROSITE profilePS501579.349167195IPR007087Zinc finger, C2H2
SuperFamilySSF563991.25E-19192239No hitNo description
Gene3DG3DSA:3.90.228.105.1E-10193285IPR012317Poly(ADP-ribose) polymerase, catalytic domain
SuperFamilySSF563991.25E-19267286No hitNo description
SuperFamilySSF563991.25E-19319419No hitNo description
Gene3DG3DSA:3.90.228.105.1E-10319419IPR012317Poly(ADP-ribose) polymerase, catalytic domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003950Molecular FunctionNAD+ ADP-ribosyltransferase activity
GO:0046872Molecular Functionmetal ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 422 aa     Download sequence    Send to blast
MALTSFVQAA TPTSHHQHHH TDDRRERKRR KRKKKPSPPG STRTLAPPSP SSSSSSSWEQ  60
FKSLLSCRST AASQVHDPSS TAARLGRAAC GSSICALRDV LHGNTRTPPL AQAARSARHH  120
PPVSSVGCGG YSRGGMQLPK LSGCYECRAV SIEPSSRRYP RPRTTLCACS ECGEVFTKPD  180
SLELHRVLRH AVSELEPEDS GRNIVEIIFK SSWQNKDRPI CQIERILKVH NAPRTVARFE  240
DYRAAVKSRA LPHLSSTAGG DRHHHPSRCA ADGNELLRFH CASLSCSLGA RGSTSLCSNC  300
SSISSSASSS PGGAAACGVC TIIRHGFAPA HGVRTTASSS LAHDRCPAAS VEDSGGEQRA  360
MLVCRVIAGR VRLPADDPVA ADAYDSVAVG DGGESYGNLE ELLVANPRAI LPCFVVIYRA  420
LS
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
12335RRERKRRKRKKKP
22535ERKRRKRKKKP
32634RKRRKRKKK
42834RRKRKKK
52933RKRKK
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_009413758.10.0PREDICTED: uncharacterized protein LOC103994997
TrEMBLM0TRS70.0M0TRS7_MUSAM; Uncharacterized protein
STRINGGSMUA_Achr8P19240_0010.0(Musa acuminata)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP124312731
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G75710.16e-85C2H2-like zinc finger protein