PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID GSMUA_Achr8P18650_001
Organism
Musa acuminata
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Zingiberales; Musaceae; Musa
Family bHLH
Protein Properties Length: 273aa    MW: 29934.7 Da    PI: 8.3475
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
GSMUA_Achr8P18650_001genomeCIRADView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH12.80.000221702071254
                            HHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHH CS
                    HLH  12 RRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksL 54 
                            R +++ ++++ L++l+ +      +K + a++L +A+ YIk L
  GSMUA_Achr8P18650_001 170 RKEKLGDRIAALQQLVAPF-----GKTDTASVLMEAIGYIKFL 207
                            7788899*********998.....8****************88 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5088811.738158207IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SuperFamilySSF474592.62E-10168220IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
CDDcd000832.35E-4168212No hitNo description
Gene3DG3DSA:4.10.280.109.8E-8172215IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 273 aa     Download sequence    Send to blast
MDGSSNEDCQ LQEKLFVRSI ASDCQTDLLQ PLPGNLSETS RFDSSRGSGR GIINMAFSTS  60
GLSHSSQNPP LPSAGYLDMD LHALHLLASA RFGRSFCPPS FTSMASSGVD HLPESIQGPF  120
HHHHKMPPLV SGGTEAKGSN SSWEHESPLS TMPRKPRVEQ RSSFSPFKVR KEKLGDRIAA  180
LQQLVAPFGK TDTASVLMEA IGYIKFLLDQ VEKLSVPYLR PSGNKRSRTS MQEASNEESD  240
EPAKRGLRSR GLCLVPLSYT SYMTSEHAAW SPR
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_009413691.10.0PREDICTED: transcription factor bHLH110-like isoform X1
TrEMBLM0TRL80.0M0TRL8_MUSAM; Uncharacterized protein
STRINGGSMUA_Achr8P18650_0010.0(Musa acuminata)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP72403242
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G27660.12e-45bHLH family protein