PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID GSMUA_Achr8P18570_001
Organism
Musa acuminata
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Zingiberales; Musaceae; Musa
Family C2H2
Protein Properties Length: 269aa    MW: 30960.7 Da    PI: 10.9474
Description C2H2 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
GSMUA_Achr8P18570_001genomeCIRADView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-C2H2157e-0592115123
                            EEETTTTEEESSHHHHHHHHHH.T CS
                zf-C2H2   1 ykCpdCgksFsrksnLkrHirt.H 23 
                            y+C+ Cg+ ++++ +Lk+H r  H
  GSMUA_Achr8P18570_001  92 YTCGVCGRKCRTNLDLKKHFRQlH 115
                            9******************99877 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:3.40.50.10109.6E-71382IPR029060PIN domain-like
SMARTSM003550.009692115IPR015880Zinc finger, C2H2-like
PROSITE profilePS5015711.21992120IPR007087Zinc finger, C2H2
PROSITE patternPS00028094115IPR007087Zinc finger, C2H2
CDDcd061676.59E-12106236No hitNo description
PfamPF019361.0E-4166234IPR021139NYN domain, limkain-b1-type
Gene3DG3DSA:3.40.50.10109.6E-7177233IPR029060PIN domain-like
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046872Molecular Functionmetal ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 269 aa     Download sequence    Send to blast
MFCGRDGVWT ARQQTVVVLW DLDNKPPRGP PYEAAVALRR AAELFGRVVE VSAYANRHAF  60
VHLPQWVLEQ RRERHRLNVL ERKGLVAPAE SYTCGVCGRK CRTNLDLKKH FRQLHVRERQ  120
KKLDRMRSLK GKKRQRYRER FIAGNHKYED AARTLLTPKT GYGLASELRR AGVFVRTVAD  180
KPQAADSAVK RQMLHSMTRG IDWLFLVSDD SDFSDMIRRA READLRTVVV GDGRTALGRQ  240
ADIWVPWVRV ENGEVGKELL QSGMVNCRI
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_009413681.10.0PREDICTED: uncharacterized protein LOC103994941
RefseqXP_009413682.20.0PREDICTED: uncharacterized protein LOC103994941
RefseqXP_009413683.20.0PREDICTED: uncharacterized protein LOC103994941
RefseqXP_018685199.10.0PREDICTED: uncharacterized protein LOC103994941
TrEMBLM0TRL00.0M0TRL0_MUSAM; Uncharacterized protein
STRINGGSMUA_Achr8P18570_0010.0(Musa acuminata)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP98063234
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G52010.11e-127C2H2-like zinc finger protein