PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

GSMUA_Achr8P18430_001

Organism

Musa acuminata

Taxonomic ID

4641

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Zingiberales; Musaceae; Musa

Family

C2H2

Protein Properties

Length: 159aa MW: 17729.3 Da PI: 10.1692

Description

C2H2 family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
GSMUA_Achr8P18430_001	genome	CIRAD	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	zf-C2H2	13.1	0.00029	82	104	1	23
EEETTTTEEESSHHHHHHHHHHT CS zf-C2H2 1 ykCpdCgksFsrksnLkrHirtH 23 y+C C+ Fs + L H+++H GSMUA_Achr8P18430_001 82 YECRFCSLKFSKSQALGGHMNRH 104 99********************9 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
SuperFamily	SSF57667	7.64E-6	79	109	No hit	No description
PROSITE profile	PS50157	9.743	82	109	IPR007087	Zinc finger, C2H2
PROSITE pattern	PS00028	0	84	104	IPR007087	Zinc finger, C2H2

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0046872	Molecular Function	metal ion binding

Sequence ? help Back to Top
Protein Sequence Length: 159 aa Download sequence Send to blast
MSPFNFNPLS RCHRLIYITS PLRFGCRRPE GNSLDLNNLP PEEQHGKQPL EESSMSSAAS 60 ADSARKLKKK SVGKGDNSGK VYECRFCSLK FSKSQALGGH MNRHRQGKTT TLETETLNRA 120 RQLVFSSEAL ARPGAIGYIT FYSVNLFLLL LPHLLLSTD

Functional Description ? help Back to Top
Source	Description
UniProt	Regulates floral organ identity and cell proliferation in the inner floral whorls. Probably specifies the identities of lodicule and stamen through positive regulation of MADS16 expression. May contribute to morphogenesis by suppressing OSH1 expression in the lateral organs. {ECO:0000269\|PubMed:19207212, ECO:0000269\|PubMed:19453444}.

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_009413669.2	3e-50	PREDICTED: zinc finger protein STAMENLESS 1-like
Swissprot	Q9LG97	3e-33	SL1_ORYSJ; Zinc finger protein STAMENLESS 1
TrEMBL	M0TRJ6	1e-113	M0TRJ6_MUSAM; Uncharacterized protein
STRING	GSMUA_Achr8P18430_001	1e-114	(Musa acuminata)

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT3G10470.1	4e-07	C2H2 family protein

Publications ? help Back to Top
Pouchkina-Stantcheva NN,Tunnacliffe A Spliced leader RNA-mediated trans-splicing in phylum Rotifera. Mol. Biol. Evol., 2005. 22(6): p. 1482-9 [PMID:15788744] Luo H, et al. Fine mapping of a pistilloid-stamen (PS) gene on the short arm of chromosome 1 in rice. Genome, 2006. 49(8): p. 1016-22 [PMID:17036076] Horigome A, et al. Rice open beak is a negative regulator of class 1 knox genes and a positive regulator of class B floral homeotic gene. Plant J., 2009. 58(5): p. 724-36 [PMID:19207212] Xiao H, et al. STAMENLESS 1, encoding a single C2H2 zinc finger protein, regulates floral organ identity in rice. Plant J., 2009. 59(5): p. 789-801 [PMID:19453444] Cai C, et al. GhPSY, a phytoene synthase gene, is related to the red plant phenotype in upland cotton (Gossypium hirsutum L.). Mol. Biol. Rep., 2014. 41(8): p. 4941-52 [PMID:24718783]