PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

GSMUA_Achr8P18340_001

Organism

Musa acuminata

Taxonomic ID

4641

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Zingiberales; Musaceae; Musa

Family

C2H2

Protein Properties

Length: 230aa MW: 24082.6 Da PI: 8.1437

Description

C2H2 family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
GSMUA_Achr8P18340_001	genome	CIRAD	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	zf-C2H2	13.3	0.00026	60	82	1	23
EEETTTTEEESSHHHHHHHHHHT CS zf-C2H2 1 ykCpdCgksFsrksnLkrHirtH 23 y+C++C + F ++ L H++ H GSMUA_Achr8P18340_001 60 YECQYCYREFANSQALGGHQNAH 82 99******************988 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
SuperFamily	SSF57667	1.41E-6	56	87	No hit	No description
Gene3D	G3DSA:3.30.160.60	5.4E-5	56	86	IPR013087	Zinc finger C2H2-type/integrase DNA-binding domain
Pfam	PF13912	1.2E-5	60	84	IPR007087	Zinc finger, C2H2
PROSITE profile	PS50157	11.676	60	87	IPR007087	Zinc finger, C2H2
PROSITE pattern	PS00028	0	62	82	IPR007087	Zinc finger, C2H2

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0003676	Molecular Function	nucleic acid binding
GO:0046872	Molecular Function	metal ion binding

Sequence ? help Back to Top
Protein Sequence Length: 230 aa Download sequence Send to blast
MSEIGYCPSK NSSSPRLKLF GFNVSEGEET GVGSDSFSPT TTTASGSGRG SGGGGEERKY 60 ECQYCYREFA NSQALGGHQN AHKKERQQLK RVQQQQLHHS GVGFGGFLYP RNPIVSAFTP 120 PPHLLSAGPP SPGPGHADWV YQPSPFHVSH GCAFPSSSAP GVTPGPAVFS CTTAGYGRAH 180 VYDVAQVTTA PSSCSKFSIN KVPTSTAVDS AVRDDSSGLD LKLSLATTGL

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_009413660.1	1e-168	PREDICTED: zinc finger protein STAMENLESS 1-like
TrEMBL	M0TRI7	1e-167	M0TRI7_MUSAM; Uncharacterized protein
STRING	GSMUA_Achr8P18340_001	1e-168	(Musa acuminata)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Monocots	OGMP7951	2	4

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT1G10480.1	3e-09	zinc finger protein 5