PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Protein Features |

Gene Ontology |

Regulation |

Orthologous Group |

Basic Information? help Back to Top

TF ID

GSMUA_Achr8P17650_001

Organism

Musa acuminata

Taxonomic ID

4641

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Zingiberales; Musaceae; Musa

Family

bHLH

Protein Properties

Length: 296aa MW: 32873.2 Da PI: 6.0662

Description

bHLH family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
GSMUA_Achr8P17650_001	genome	CIRAD	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	HLH	43.4	6.3e-14	110	161	1	55
CHHHHHHHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHHH CS HLH 1 rrrahnerErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksLq 55 +r+ h ++Er+RR+++N+ ++ Lr+l+P++ + ++ + a+i+ A++Y+k+L+ GSMUA_Achr8P17650_001 110 QRMVHIAVERNRRKQMNEYLAVLRSLMPPS---YVPRGDQASIVGGAINYVKELE 161 7999************************...9****************996 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
CDD	cd00083	2.37E-13	108	165	No hit	No description
Gene3D	G3DSA:4.10.280.10	1.4E-13	108	165	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
PROSITE profile	PS50888	15.548	109	160	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
SuperFamily	SSF47459	1.31E-16	109	173	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
Pfam	PF00010	3.9E-11	110	161	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
SMART	SM00353	4.3E-11	115	166	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0046983	Molecular Function	protein dimerization activity

Sequence ? help Back to Top
Protein Sequence Length: 296 aa Download sequence Send to blast
MALEAVVFSQ GLFGYACKES CTTPGGGACG YDLGDVSMEA KSSMLDGDMD RTRYPSCSDL 60 VQDLEGWHAN YSTAEGQEEA PAEGKATEVV SRRKRPRTKG IKNKEEVESQ RMVHIAVERN 120 RRKQMNEYLA VLRSLMPPSY VPRGDQASIV GGAINYVKEL EQLLQSIQVQ KQLEQRADTD 180 GNQNGVANVD KDYSGNEVMV VKRSAMADIE VTIVESHVNL KVLSRRHPKQ LSKLLTWLQN 240 LRLTPLHLNV TTANERVLYS FSLKVEDDCS YASVTQIAAA VCEMIGRIRE ENIGLS

Nucleic Localization Signal ? help Back to Top

No.	Start	End	Sequence
1	110	121	RMVHIAVERNRR

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_009413580.1	0.0	PREDICTED: transcription factor bHLH96-like isoform X2
TrEMBL	M0TRB8	0.0	M0TRB8_MUSAM; Uncharacterized protein
STRING	GSMUA_Achr8P17650_001	0.0	(Musa acuminata)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Monocots	OGMP741	38	156

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT1G72210.1	2e-65	bHLH family protein