PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID GSMUA_Achr8P17410_001
Organism
Musa acuminata
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Zingiberales; Musaceae; Musa
Family C3H
Protein Properties Length: 371aa    MW: 42609.6 Da    PI: 4.7169
Description C3H family protein
Gene Model
Gene Model ID Type Source Coding Sequence
GSMUA_Achr8P17410_001genomeCIRADView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-CCCH17.66.8e-0691114226
                            -S---SGGGGTS--TTTTT-SS-SS CS
                zf-CCCH   2 ktelCrffartGtCkyGdrCkFaHg 26 
                            k  lC ff   G+C+ G +CkF+H+
  GSMUA_Achr8P17410_001  91 KSILCEFFKV-GQCQKGFKCKFSHD 114
                            6779**9999.*************7 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF902297.85E-689114IPR000571Zinc finger, CCCH-type
PROSITE profilePS5010314.83189116IPR000571Zinc finger, CCCH-type
SMARTSM003561.5E-489115IPR000571Zinc finger, CCCH-type
Gene3DG3DSA:4.10.1000.102.7E-491115IPR000571Zinc finger, CCCH-type
SMARTSM003564.3161198IPR000571Zinc finger, CCCH-type
PROSITE profilePS5010310.953161199IPR000571Zinc finger, CCCH-type
PfamPF165431.8E-16218301IPR032378ZC3H15/TMA46 family, C-terminal
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046872Molecular Functionmetal ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 371 aa     Download sequence    Send to blast
MPPKGQPSKS ELAKKQKVVE DKTFGLKNKN KSKNVQKYVQ SLQQSVQPKP DSSKIAAKKK  60
KEEDKAREKE LNDLFKIAVS QPKVPVGVDP KSILCEFFKV GQCQKGFKCK FSHDLNVQRK  120
GEKIDLYSDQ RDRDQGTMED WDQEMLEKVV ETKNKEYNQN KPTDIVCKYF LDAVEKKQYG  180
WFWVCPNGGK DCHYRHALPP GYVLKSQMKA LLEEETEKIT IEEEIENQAS ARAKVSTSTP  240
LTPELFTQWK RKKMEEREAD LAAMRADRAK NDRMSGRELF LSDSSLFVDD DEAYEKYNRE  300
EQPESTEKVK SEPGVEESSS MPSVDMNSEI PDDDDDDDDD DELDIDELNE LEASLSRTSI  360
QIHEPGIESQ S
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_009413536.10.0PREDICTED: zinc finger CCCH domain-containing protein 11 isoform X2
SwissprotQ0JHZ21e-179C3H11_ORYSJ; Zinc finger CCCH domain-containing protein 11
TrEMBLM0TR940.0M0TR94_MUSAM; Uncharacterized protein
STRINGGSMUA_Achr8P17410_0010.0(Musa acuminata)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP88592027
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G20280.11e-146C3H family protein
Publications ? help Back to Top
  1. Kikuchi S, et al.
    Collection, mapping, and annotation of over 28,000 cDNA clones from japonica rice.
    Science, 2003. 301(5631): p. 376-9
    [PMID:12869764]