PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID GSMUA_Achr8P16190_001
Organism
Musa acuminata
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Zingiberales; Musaceae; Musa
Family C2H2
Protein Properties Length: 350aa    MW: 40067 Da    PI: 7.0736
Description C2H2 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
GSMUA_Achr8P16190_001genomeCIRADView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-C2H212.70.0003980102323
                            ET..TTTEEESSHHHHHHHHHHT CS
                zf-C2H2   3 Cp..dCgksFsrksnLkrHirtH 23 
                            C+   Cg++F +   Lk+H   H
  GSMUA_Achr8P16190_001  80 CSyeGCGRTFIDAGALKKHAHIH 102
                            77779**************9877 PP
2zf-C2H214.20.00013107131123
                            EEET..TTTEEESSHHHHHHHHHHT CS
                zf-C2H2   1 ykCp..dCgksFsrksnLkrHirtH 23 
                            + C+   Cgk F ++s LkrH   H
  GSMUA_Achr8P16190_001 107 HICQydGCGKKFLDSSKLKRHYLIH 131
                            679999***************9988 PP
3zf-C2H221.37.1e-07137161123
                            EEET..TTTEEESSHHHHHHHHHHT CS
                zf-C2H2   1 ykCp..dCgksFsrksnLkrHirtH 23 
                            + Cp   Cgk Fs   nL+ H+rtH
  GSMUA_Achr8P16190_001 137 FICPheGCGKAFSLDFNLRAHMRTH 161
                            78**********************9 PP
4zf-C2H217.89.3e-06167192123
                            EEET..TTTEEESSHHHHHHHHHH.T CS
                zf-C2H2   1 ykCp..dCgksFsrksnLkrHirt.H 23 
                            ++Cp   C k+F++ s L++Hi+t H
  GSMUA_Achr8P16190_001 167 HVCPypECAKRFTNESKLRTHIKTqH 192
                            79**********************99 PP
5zf-C2H214.97.9e-05230255123
                            EEET..TTTEEESSHHHHHHHHHH.T CS
                zf-C2H2   1 ykCp..dCgksFsrksnLkrHirt.H 23 
                            y+Cp   Cgk + + + L+ H r+ H
  GSMUA_Achr8P16190_001 230 YVCPyeGCGKAYIHEYKLNLHFRReH 255
                            99*********************999 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:3.30.160.601.1E-1274102IPR013087Zinc finger C2H2-type/integrase DNA-binding domain
SuperFamilySSF576676.73E-675127No hitNo description
PROSITE profilePS5015710.84578107IPR007087Zinc finger, C2H2
SMARTSM003550.005978102IPR015880Zinc finger, C2H2-like
PROSITE patternPS00028080102IPR007087Zinc finger, C2H2
Gene3DG3DSA:3.30.160.604.0E-13103127IPR013087Zinc finger C2H2-type/integrase DNA-binding domain
PROSITE profilePS5015713.422107136IPR007087Zinc finger, C2H2
SMARTSM003550.0037107131IPR015880Zinc finger, C2H2-like
PROSITE patternPS000280109131IPR007087Zinc finger, C2H2
SuperFamilySSF576671.66E-14118171No hitNo description
Gene3DG3DSA:3.30.160.605.7E-20128160IPR013087Zinc finger C2H2-type/integrase DNA-binding domain
SMARTSM003553.7E-4137161IPR015880Zinc finger, C2H2-like
PROSITE profilePS5015712.528137166IPR007087Zinc finger, C2H2
PROSITE patternPS000280139161IPR007087Zinc finger, C2H2
Gene3DG3DSA:3.30.160.608.2E-11161190IPR013087Zinc finger C2H2-type/integrase DNA-binding domain
SuperFamilySSF576677.49E-5167191No hitNo description
PROSITE profilePS5015710.201167197IPR007087Zinc finger, C2H2
SMARTSM003550.0026167192IPR015880Zinc finger, C2H2-like
PROSITE patternPS000280169192IPR007087Zinc finger, C2H2
Gene3DG3DSA:3.30.160.601.0E-9225252IPR013087Zinc finger C2H2-type/integrase DNA-binding domain
SuperFamilySSF576674.13E-6225253No hitNo description
PROSITE profilePS5015710.637230260IPR007087Zinc finger, C2H2
SMARTSM003550.0045230255IPR015880Zinc finger, C2H2-like
PROSITE patternPS000280232255IPR007087Zinc finger, C2H2
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003676Molecular Functionnucleic acid binding
GO:0046872Molecular Functionmetal ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 350 aa     Download sequence    Send to blast
MELHMNHAMA EKRHAAQNRR PTAVRWFKEW VPQDVVATGG KCMLLKWVTE DMLKALKEKN  60
KETEAEEQKP EPATEVLFLC SYEGCGRTFI DAGALKKHAH IHGEKQHICQ YDGCGKKFLD  120
SSKLKRHYLI HTGERDFICP HEGCGKAFSL DFNLRAHMRT HSLENYHVCP YPECAKRFTN  180
ESKLRTHIKT QHEKSTVMDT VKHTTPVEKP HTTPKLSAAA YGSGSAERPY VCPYEGCGKA  240
YIHEYKLNLH FRREHPGHNS EENGKPSPAR SKPNLTPQMP PAKVSNRKGT SSTPKKSTPV  300
VVVKKQLPSK EMYEEDSEET EEDQDNVEEE DGGWRCQEVN RDDEETEEEE
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1ubd_C4e-34801908116PROTEIN (YY1 ZINC FINGER DOMAIN)
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtDual-function transcription factor with both repression and activation activities. Binds to 5'-CCATATT-3' motif in target gene promoters (e.g. ABR1) (PubMed:26961720). Binds also to G-rich DNA motif 5'-GGGGGCAGTGG-3' (PubMed:22508367). Regulates the expression of genes involved in diverse cellular pathways, including glucose metabolism, photosynthesis, phototropism and stress response (e.g. salt, drought and osmotic stress) (PubMed:22508367, PubMed:26961720). Regulates plant immunity, especially during necrotrophic fungal infection (e.g. B.cinerea) (PubMed:24451981). Binds to ABR1 promoter and promotes its expression, thus negatively regulating the abscisic acid (ABA) signaling pathway. Represses ABA- and salt-responsive genes expression (PubMed:26961720). {ECO:0000269|PubMed:22508367, ECO:0000269|PubMed:24451981, ECO:0000269|PubMed:26961720}.
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: Induced by abscisic acid (ABA) in an ABI1- and ABI4-dependent manner. Stimulated by stress conditions including high salt, osmotic stress (e.g. mannitol) and dehydration. May be induced by ABI4 but repressed by ABR1. Repressed by darkness but induced by light. {ECO:0000269|PubMed:26961720}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_009413413.10.0PREDICTED: uncharacterized zinc finger protein At4g06634
SwissprotQ2V3L31e-113YY1_ARATH; Zinc finger transcription factor YY1
TrEMBLM0TQX20.0M0TQX2_MUSAM; Uncharacterized protein
STRINGGSMUA_Achr8P16190_0010.0(Musa acuminata)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP20943899
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G06634.11e-113C2H2 family protein
Publications ? help Back to Top
  1. Kumekawa N,Hosouchi T,Tsuruoka H,Kotani H
    The size and sequence organization of the centromeric region of Arabidopsis thaliana chromosome 4.
    DNA Res., 2001. 8(6): p. 285-90
    [PMID:11853315]
  2. Li T,Wu XY,Li H,Song JH,Liu JY
    A Dual-Function Transcription Factor, AtYY1, Is a Novel Negative Regulator of the Arabidopsis ABA Response Network.
    Mol Plant, 2016. 9(5): p. 650-661
    [PMID:26961720]
  3. Wu XY,Li T
    A Casein Kinase II Phosphorylation Site in AtYY1 Affects Its Activity, Stability, and Function in the ABA Response.
    Front Plant Sci, 2017. 8: p. 323
    [PMID:28348572]