PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

GSMUA_Achr8P13370_001

Organism

Musa acuminata

Taxonomic ID

4641

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Zingiberales; Musaceae; Musa

Family

Nin-like

Protein Properties

Length: 717aa MW: 81613.4 Da PI: 9.1816

Description

Nin-like family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
GSMUA_Achr8P13370_001	genome	CIRAD	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	RWP-RK	79.2	4.3e-25	297	346	3	52
RWP-RK 3 keisledlskyFslpikdAAkeLgvclTvLKriCRqyGIkRWPhRkiksl 52 ++i l dl kyF+lpi++A+k L v+lTvLKr+CR++GI+RWPhRkiksl GSMUA_Achr8P13370_001 297 ANIALTDLVKYFDLPITEASKYLRVGLTVLKRKCREFGIPRWPHRKIKSL 346 79**********************************************97 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
PROSITE profile	PS51519	18.781	281	366	IPR003035	RWP-RK domain
Pfam	PF02042	2.4E-20	298	346	IPR003035	RWP-RK domain
Pfam	PF09348	4.0E-47	523	671	IPR018960	Domain of unknown function DUF1990

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0009941	Cellular Component	chloroplast envelope

Sequence ? help Back to Top
Protein Sequence Length: 717 aa Download sequence Send to blast
MYFIPFSFLF RKVFCERERE RDNNMQVVRG WFSPSCAPCA LACQLSRSRC MPTELKQHSG 60 NGSTDKSSCS TGSRCNIMHS PAFPSSSSRP LSALFVFRSI LNQELIRSLH GYQASEEEEE 120 WVEREFLFSP SSCIEMRDPI PGPIMVASTA GDGGNGFRYR FKEEQSVGLW RCILAFDSTV 180 AFSASSSPIP PLLCLSRNPR LKNIPTLLCD LQEAFQLRCE METKNTISLA SKGIQVCEGK 240 EPHDTEEYAD TGYEDGSSDS CSTIRHVKLR NQKNHRTLQE LAISMKKKKR AATEHVANIA 300 LTDLVKYFDL PITEASKYLR VGLTVLKRKC REFGIPRWPH RKIKSLDNLI QNLQEEVHRQ 360 EKENKSAAMK AVIKRQRMLE GEKECIEKNP FMELQIETKR FRQDVFKRRH RAKALVGILG 420 SDTNFGSVTR TRWPTRRIIP SSFLHLKHPT WWDADRGIGI AVTRGIMVGG LFLSLGRPTR 480 QQQKACIARS GDFNYDPKFH GASSSLRSSL GDNVVVEEEA LSKSGFFVNR ARVLLGAGPR 540 TFDLAKSALL SWKHFELGWT FVDPETPVEK GERFCVCVKE VIPWLMMPLR IAYVRDEISG 600 RGPTKASFGF GSGTLQGHLL AGEERFSIER DENDEVWYEI YSFSKPAHFL SMVGYPYVKL 660 RQQFFAHRSA NALKKHVAYQ AALSCQLHNH YMEPFDTTQC SKSHQYRSPQ VDVYLSS

Sequence ? help Back to Top

Protein Sequence Length: 717 aa Download sequence Send to blast

MYFIPFSFLF RKVFCERERE RDNNMQVVRG WFSPSCAPCA LACQLSRSRC MPTELKQHSG  60
NGSTDKSSCS TGSRCNIMHS PAFPSSSSRP LSALFVFRSI LNQELIRSLH GYQASEEEEE  120
WVEREFLFSP SSCIEMRDPI PGPIMVASTA GDGGNGFRYR FKEEQSVGLW RCILAFDSTV  180
AFSASSSPIP PLLCLSRNPR LKNIPTLLCD LQEAFQLRCE METKNTISLA SKGIQVCEGK  240
EPHDTEEYAD TGYEDGSSDS CSTIRHVKLR NQKNHRTLQE LAISMKKKKR AATEHVANIA  300
LTDLVKYFDL PITEASKYLR VGLTVLKRKC REFGIPRWPH RKIKSLDNLI QNLQEEVHRQ  360
EKENKSAAMK AVIKRQRMLE GEKECIEKNP FMELQIETKR FRQDVFKRRH RAKALVGILG  420
SDTNFGSVTR TRWPTRRIIP SSFLHLKHPT WWDADRGIGI AVTRGIMVGG LFLSLGRPTR  480
QQQKACIARS GDFNYDPKFH GASSSLRSSL GDNVVVEEEA LSKSGFFVNR ARVLLGAGPR  540
TFDLAKSALL SWKHFELGWT FVDPETPVEK GERFCVCVKE VIPWLMMPLR IAYVRDEISG  600
RGPTKASFGF GSGTLQGHLL AGEERFSIER DENDEVWYEI YSFSKPAHFL SMVGYPYVKL  660
RQQFFAHRSA NALKKHVAYQ AALSCQLHNH YMEPFDTTQC SKSHQYRSPQ VDVYLSS

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_018686027.1	0.0	PREDICTED: protein RKD5
TrEMBL	M0TQ40	0.0	M0TQ40_MUSAM; Uncharacterized protein
STRING	GSMUA_Achr8P13370_001	0.0	(Musa acuminata)

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT4G35590.1	7e-58	RWP-RK domain-containing protein