PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Home  TFext  BLAST  Prediction  Download  Help  About  Links  PlantRegMap
(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID GSMUA_Achr8P12330_001
Organism
Musa acuminata
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Zingiberales; Musaceae; Musa
Family bHLH
Protein Properties Length: 366aa    MW: 41220.7 Da    PI: 6.5054
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
GSMUA_Achr8P12330_001genomeCIRADView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH38.81.6e-12160211155
                            CHHHHHHHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHHH CS
                    HLH   1 rrrahnerErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksLq 55 
                            +r++h ++Er+RR+ +N+ +++Lr+l+P++   +  + + a+i   A++++k+L+
  GSMUA_Achr8P12330_001 160 QRMTHIAVERNRRRLMNDHLATLRSLMPSS---YVHRGDQASIIGGAIDFVKELE 211
                            79****************************...9******************995 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
CDDcd000831.54E-11158214No hitNo description
Gene3DG3DSA:4.10.280.104.1E-13158213IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SuperFamilySSF474592.75E-15159228IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PROSITE profilePS5088814.78159210IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PfamPF000104.8E-10160211IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SMARTSM003533.0E-8165216IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 366 aa     Download sequence    Send to blast
MFFLCCCFSL NILAYPFISP LSLFPKQLVR EEPSAGCLEA GAASATFSEH PEMIYGNLFS  60
HQMPFLQLLH GAMQAGEEEV ELHLQQYQYQ HEGFFTSCTQ ESNFQLLLRL QGQNCFKQLR  120
TAEMDTSRVV EQLESCITHA SESETRGAST SKSVQEVESQ RMTHIAVERN RRRLMNDHLA  180
TLRSLMPSSY VHRGDQASII GGAIDFVKEL EQRLLSLRTQ KRLLESAAVR LRPNDDEPRH  240
TSVLHDGFFI SPQYTGYSRS QQRRRYANGE EAQQEDGTGV DVEATVVQGH VNLKVATRRR  300
RGQLARAIAA MEELRLSVLH LNVASLEPSS ILYSLSLKME EACKLGSADE VATAVHQIFS  360
YINACC
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1160171RMTHIAVERNRR
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: Repressed by heat treatment. {ECO:0000269|PubMed:12679534}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_018685717.10.0PREDICTED: transcription factor bHLH57-like
SwissprotO810375e-58BH070_ARATH; Transcription factor bHLH70
SwissprotQ9M1283e-58BH057_ARATH; Transcription factor bHLH57
TrEMBLM0TPT60.0M0TPT6_MUSAM; Uncharacterized protein
STRINGGSMUA_Achr8P12330_0010.0(Musa acuminata)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP79573344
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G01460.11e-60bHLH family protein
Publications ? help Back to Top
  1. Skinner MK,Rawls A,Wilson-Rawls J,Roalson EH
    Basic helix-loop-helix transcription factor gene family phylogenetics and nomenclature.
    Differentiation, 2010. 80(1): p. 1-8
    [PMID:20219281]
  2. Ding Y, et al.
    Four distinct types of dehydration stress memory genes in Arabidopsis thaliana.
    BMC Plant Biol., 2013. 13: p. 229
    [PMID:24377444]