PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID GSMUA_Achr8P12100_001
Organism
Musa acuminata
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Zingiberales; Musaceae; Musa
Family NAC
Protein Properties Length: 332aa    MW: 38166.2 Da    PI: 5.6878
Description NAC family protein
Gene Model
Gene Model ID Type Source Coding Sequence
GSMUA_Achr8P12100_001genomeCIRADView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1NAM171.72.3e-5351301125
                    NAM   1 lppGfrFhPtdeelvveyLkkkvegkkleleevikevdiykvePwdLpk..kvka.eekewyfFskrdkkyatgkrknratksgyWka 85 
                            +ppGfrFhPtdeelv +yLkkkv+++k++l +vi+++d+y++ePwdL++  ++   e++ewyfFs++dkky+tg+r+nrat +g+Wka
  GSMUA_Achr8P12100_001   5 VPPGFRFHPTDEELVGYYLKKKVASQKIDL-DVIRDIDLYRIEPWDLQErcRIGYeEQSEWYFFSHKDKKYPTGTRTNRATMAGFWKA 91 
                            69****************************.9***************953433332566***************************** PP

                    NAM  86 tgkdkevlskkgelvglkktLvfykgrapkgektdWvmhe 125
                            tg+dk+v++ k++l+g++ktLvfykgrap+g+ktdW+mhe
  GSMUA_Achr8P12100_001  92 TGRDKAVHD-KNKLIGMRKTLVFYKGRAPNGQKTDWIMHE 130
                            *********.999**************************9 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF1019411.1E-553157IPR003441NAC domain
PROSITE profilePS5100556.295157IPR003441NAC domain
PfamPF023656.5E-276130IPR003441NAC domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0010200Biological Processresponse to chitin
GO:0048759Biological Processxylem vessel member cell differentiation
GO:1901348Biological Processpositive regulation of secondary cell wall biogenesis
GO:1990110Biological Processcallus formation
GO:0044212Molecular Functiontranscription regulatory region DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 332 aa     Download sequence    Send to blast
MESCVPPGFR FHPTDEELVG YYLKKKVASQ KIDLDVIRDI DLYRIEPWDL QERCRIGYEE  60
QSEWYFFSHK DKKYPTGTRT NRATMAGFWK ATGRDKAVHD KNKLIGMRKT LVFYKGRAPN  120
GQKTDWIMHE NEKKRKETNV ISHSQEEGWV VCRAFKKRAT CPARSVAAIW NSGYCYDELD  180
RMNSMVNPMM CLQKQPMSLQ CKQETEFEEL HLLHPSQFVQ LPQLESPSLP LVSQPSSKMT  240
VLEKEDEQQQ QQAGMSSGMG SVTDWRALDK FVASQLSHEG GSFVSEQVVS DFGVDNDSEM  300
ALLLLQSERE GFNEFIGSGE PDCDKGICIF EQ
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
3ulx_A4e-49215812169Stress-induced transcription factor NAC1
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtTranscription activator that binds to the secondary wall NAC binding element (SNBE), 5'-(T/A)NN(C/T)(T/C/G)TNNNNNNNA(A/C)GN(A/C/T)(A/T)-3', in the promoter of target genes (By similarity). Involved in xylem formation by promoting the expression of secondary wall-associated transcription factors and of genes involved in secondary wall biosynthesis and programmed cell death, genes driven by the secondary wall NAC binding element (SNBE). Triggers thickening of secondary walls (PubMed:25148240). {ECO:0000250|UniProtKB:Q9LVA1, ECO:0000269|PubMed:25148240}.
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00266DAPTransfer from AT2G18060Download
Motif logo
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: Induced by chitin (e.g. chitooctaose) (PubMed:17722694). Accumulates in plants exposed to callus induction medium (CIM) (PubMed:17581762). {ECO:0000269|PubMed:17581762, ECO:0000269|PubMed:17722694}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankKT3568720.0KT356872.1 Musa AAB Group cultivar Rasthali vascular related NAC-domain protein 1 (VND1) mRNA, complete cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_009411440.10.0PREDICTED: NAC domain-containing protein 37-like
SwissprotQ9SL411e-136NAC37_ARATH; NAC domain-containing protein 37
TrEMBLM0TPR30.0M0TPR3_MUSAM; Uncharacterized protein
STRINGGSMUA_Achr8P12100_0010.0(Musa acuminata)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP36253768
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G18060.11e-120vascular related NAC-domain protein 1
Publications ? help Back to Top
  1. Duarte JM, et al.
    Expression pattern shifts following duplication indicative of subfunctionalization and neofunctionalization in regulatory genes of Arabidopsis.
    Mol. Biol. Evol., 2006. 23(2): p. 469-78
    [PMID:16280546]
  2. Negi S,Tak H,Ganapathi TR
    Cloning and functional characterization of MusaVND1 using transgenic banana plants.
    Transgenic Res., 2015. 24(3): p. 571-85
    [PMID:25523085]
  3. Tan TT, et al.
    Transcription Factors VND1-VND3 Contribute to Cotyledon Xylem Vessel Formation.
    Plant Physiol., 2018. 176(1): p. 773-789
    [PMID:29133368]