PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Home  TFext  BLAST  Prediction  Download  Help  About  Links  PlantRegMap
(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID GSMUA_Achr8P07460_001
Organism
Musa acuminata
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Zingiberales; Musaceae; Musa
Family C2H2
Protein Properties Length: 301aa    MW: 35187.1 Da    PI: 8.9081
Description C2H2 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
GSMUA_Achr8P07460_001genomeCIRADView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-C2H220.71.1e-062852123
                           EEET..TTTEEESSHHHHHHHHHHT CS
                zf-C2H2  1 ykCp..dCgksFsrksnLkrHirtH 23
                           ++Cp  dC  s++rk++L+rH+ tH
  GSMUA_Achr8P07460_001 28 FSCPvdDCRVSYRRKDHLTRHLLTH 52
                           89*********************99 PP
2zf-C2H215.54.9e-055782123
                           EEET..TTTEEESSHHHHHHHHHH.T CS
                zf-C2H2  1 ykCp..dCgksFsrksnLkrHirt.H 23
                           + Cp  +C++ F  k n+krH+r  H
  GSMUA_Achr8P07460_001 57 FACPvdNCNRKFGIKANMKRHMREiH 82
                           78*********************988 PP
3zf-C2H220.71.1e-0694118123
                            EEET..TTTEEESSHHHHHHHHHHT CS
                zf-C2H2   1 ykCp..dCgksFsrksnLkrHirtH 23 
                            y+C+   Cg++F+ +s Lk+H   H
  GSMUA_Achr8P07460_001  94 YVCGesGCGRTFKYPSKLKKHEEAH 118
                            99*******************8776 PP
4zf-C2H214.30.00012129151323
                            ET.TTTEEESSHHHHHHHHHH.T CS
                zf-C2H2   3 Cp.dCgksFsrksnLkrHirt.H 23 
                            C+  C+k+F++ + Lk H rt H
  GSMUA_Achr8P07460_001 129 CEpGCTKTFTNAECLKAHVRTcH 151
                            668******************66 PP
5zf-C2H220.51.3e-06185209223
                            EET..TTTEEESSHHHHHHHHHH.T CS
                zf-C2H2   2 kCp..dCgksFsrksnLkrHirt.H 23 
                            +C+  dC+ +Fs+ snL++Hir  H
  GSMUA_Achr8P07460_001 185 ECNfkDCNCTFSNASNLRQHIRAiH 209
                            69999*****************888 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF576675.04E-82154No hitNo description
Gene3DG3DSA:3.30.160.604.5E-102454IPR013087Zinc finger C2H2-type/integrase DNA-binding domain
SMARTSM003550.00452852IPR015880Zinc finger, C2H2-like
PROSITE profilePS501579.912857IPR007087Zinc finger, C2H2
PROSITE patternPS0002803052IPR007087Zinc finger, C2H2
SuperFamilySSF576671.81E-65583No hitNo description
Gene3DG3DSA:3.30.160.606.6E-75584IPR013087Zinc finger C2H2-type/integrase DNA-binding domain
SMARTSM003559.2E-45782IPR015880Zinc finger, C2H2-like
PROSITE profilePS5015713.0695787IPR007087Zinc finger, C2H2
PROSITE patternPS0002805982IPR007087Zinc finger, C2H2
SuperFamilySSF576671.04E-590119No hitNo description
Gene3DG3DSA:3.30.160.601.0E-790118IPR013087Zinc finger C2H2-type/integrase DNA-binding domain
SMARTSM003550.00994118IPR015880Zinc finger, C2H2-like
PROSITE profilePS5015710.78394118IPR007087Zinc finger, C2H2
PROSITE patternPS00028096118IPR007087Zinc finger, C2H2
SMARTSM003550.18126151IPR015880Zinc finger, C2H2-like
PROSITE profilePS501578.6127151IPR007087Zinc finger, C2H2
Gene3DG3DSA:3.30.160.607.0E-5127149IPR013087Zinc finger C2H2-type/integrase DNA-binding domain
PROSITE patternPS000280128151IPR007087Zinc finger, C2H2
SMARTSM0035549154175IPR015880Zinc finger, C2H2-like
SuperFamilySSF576673.97E-7166226No hitNo description
PROSITE profilePS5015712.321184214IPR007087Zinc finger, C2H2
SMARTSM003550.0021184209IPR015880Zinc finger, C2H2-like
Gene3DG3DSA:3.30.160.603.6E-5185211IPR013087Zinc finger C2H2-type/integrase DNA-binding domain
PROSITE patternPS000280186209IPR007087Zinc finger, C2H2
Gene3DG3DSA:3.30.160.602.0E-4212237IPR013087Zinc finger C2H2-type/integrase DNA-binding domain
SMARTSM003552.8215241IPR015880Zinc finger, C2H2-like
PROSITE profilePS501579.162215241IPR007087Zinc finger, C2H2
PROSITE patternPS000280217241IPR007087Zinc finger, C2H2
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0005730Cellular Componentnucleolus
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0008097Molecular Function5S rRNA binding
GO:0046872Molecular Functionmetal ion binding
GO:0080084Molecular Function5S rDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 301 aa     Download sequence    Send to blast
MDQYQEGGTS CEAPSRKPQS RNFNERPFSC PVDDCRVSYR RKDHLTRHLL THQGKLFACP  60
VDNCNRKFGI KANMKRHMRE IHEDESPCEG QKQYVCGESG CGRTFKYPSK LKKHEEAHVK  120
MDCSEVVCCE PGCTKTFTNA ECLKAHVRTC HQYAECEVCG TKQLKRNYKR HELKHELNEK  180
TDRIECNFKD CNCTFSNASN LRQHIRAIHE KMRPFTCQFS GCGKKFPYKH VRDKHEKSCV  240
HDHVQGDFIE TDERLRSRPR GGRKRKCMSV ETLQRKRVVP PSRASVLDDG VNYLRWLLNE  300
Q
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1tf6_A2e-122415239189PROTEIN (TRANSCRIPTION FACTOR IIIA)
1tf6_D2e-122415239189PROTEIN (TRANSCRIPTION FACTOR IIIA)
Search in ModeBase
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1257265RPRGGRKRK
Functional Description ? help Back to Top
Source Description
UniProtEssential protein (PubMed:22353599). Isoform 1 is a transcription activator the binds both 5S rDNA and 5S rRNA and stimulates the transcription of 5S rRNA gene (PubMed:12711688, PubMed:22353599). Isoform 1 regulates 5S rRNA levels during development (PubMed:22353599). {ECO:0000269|PubMed:12711688, ECO:0000269|PubMed:22353599}.
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00229DAPTransfer from AT1G72050Download
Motif logo
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_009411993.10.0PREDICTED: transcription factor IIIA
SwissprotQ84MZ45e-97TF3A_ARATH; Transcription factor IIIA
TrEMBLM0TNE90.0M0TNE9_MUSAM; Uncharacterized protein
STRINGGSMUA_Achr8P07460_0010.0(Musa acuminata)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP23823882
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G72050.12e-91transcription factor IIIA