PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID GSMUA_Achr8P06870_001
Organism
Musa acuminata
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Zingiberales; Musaceae; Musa
Family ERF
Protein Properties Length: 185aa    MW: 19451 Da    PI: 10.8044
Description ERF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
GSMUA_Achr8P06870_001genomeCIRADView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1AP260.15e-192270355
                    AP2  3 ykGVrwdkkrgrWvAeIrdpsengkrkrfslgkfgtaeeAakaaiaarkkleg 55
                           ++GVr ++ +gr++AeIrdp    k+ r++lg+f+taeeAa+a++  +++++g
  GSMUA_Achr8P06870_001 22 FRGVRKRP-WGRYAAEIRDPA---KKSRVWLGTFDTAEEAARAYDTVALQFRG 70
                           8*******.**********83...36***********************9998 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM003801.8E-352184IPR001471AP2/ERF domain
Gene3DG3DSA:3.30.730.101.3E-312178IPR001471AP2/ERF domain
PfamPF008471.4E-122170IPR001471AP2/ERF domain
PROSITE profilePS5103224.0122178IPR001471AP2/ERF domain
CDDcd000181.75E-302179No hitNo description
SuperFamilySSF541713.86E-222279IPR016177DNA-binding domain
PRINTSPR003673.3E-112233IPR001471AP2/ERF domain
PRINTSPR003673.3E-114460IPR001471AP2/ERF domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0001944Biological Processvasculature development
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0051301Biological Processcell division
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 185 aa     Download sequence    Send to blast
MSPRAKNSDG GEGGGETKEM RFRGVRKRPW GRYAAEIRDP AKKSRVWLGT FDTAEEAARA  60
YDTVALQFRG PKAKTNFPIF TAAAGAGTAP SSPSSSGNTV ESSTPSAPPP LELELGHAAA  120
RFPFLHARPF LFLGAASRSD AAAASAALTG FKGIGTRVSP TVMAAQARRL PFDLDLNLPP  180
PPEVA
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5wx9_A4e-211078472Ethylene-responsive transcription factor ERF096
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtTranscription factor that binds to the GCC-box pathogenesis-related promoter element. Involved in the regulation of gene expression by stress factors and by components of stress signal transduction pathways. Probably acts as a transcriptional repressor and may regulate other AtERFs (By similarity). {ECO:0000250}.
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00164DAPTransfer from AT1G28370Download
Motif logo
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: Strongly and quickly induced by ethylene. {ECO:0000269|PubMed:10945353}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_009412068.11e-129PREDICTED: ethylene-responsive transcription factor 11-like
SwissprotQ9LW499e-40ERF4_NICSY; Ethylene-responsive transcription factor 4
TrEMBLM0TN901e-127M0TN90_MUSAM; Uncharacterized protein
STRINGGSMUA_Achr8P06870_0011e-128(Musa acuminata)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP118532537
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G44210.12e-34erf domain protein 9