PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID GSMUA_Achr8P05510_001
Organism
Musa acuminata
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Zingiberales; Musaceae; Musa
Family C3H
Protein Properties Length: 311aa    MW: 34148.3 Da    PI: 10.2449
Description C3H family protein
Gene Model
Gene Model ID Type Source Coding Sequence
GSMUA_Achr8P05510_001genomeCIRADView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-CCCH22.22.4e-075273426
                           ---SGGGGTS--TTTTT-SS-SS CS
                zf-CCCH  4 elCrffartGtCkyGdrCkFaHg 26
                           +lC+f++  G C+ Gd CkF+H+
  GSMUA_Achr8P05510_001 52 KLCNFYLM-GRCQQGDLCKFSHD 73
                           79**9999.*************6 PP
2zf-CCCH19.61.6e-06107127525
                            --SGGGGTS--TTTTT-SS-S CS
                zf-CCCH   5 lCrffartGtCkyGdrCkFaH 25 
                            +C++f+  G C++GdrCkF+H
  GSMUA_Achr8P05510_001 107 PCHNFHSKGSCHRGDRCKFSH 127
                            7******************** PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5010314.6334875IPR000571Zinc finger, CCCH-type
SuperFamilySSF902295.76E-74973IPR000571Zinc finger, CCCH-type
SMARTSM003560.00135074IPR000571Zinc finger, CCCH-type
Gene3DG3DSA:4.10.1000.101.2E-45274IPR000571Zinc finger, CCCH-type
PfamPF006428.6E-55273IPR000571Zinc finger, CCCH-type
SMARTSM003560.04677103IPR000571Zinc finger, CCCH-type
PROSITE profilePS5010310.46577101IPR000571Zinc finger, CCCH-type
SuperFamilySSF902292.55E-579102IPR000571Zinc finger, CCCH-type
PROSITE profilePS5010313.601102130IPR000571Zinc finger, CCCH-type
SMARTSM003561.9105129IPR000571Zinc finger, CCCH-type
SuperFamilySSF902291.96E-7106128IPR000571Zinc finger, CCCH-type
Gene3DG3DSA:4.10.1000.101.9E-4107128IPR000571Zinc finger, CCCH-type
PfamPF006421.3E-4107127IPR000571Zinc finger, CCCH-type
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046872Molecular Functionmetal ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 311 aa     Download sequence    Send to blast
MMCISKNRNI TNTFFFLIHL QKAKKRKRAE KERQQGVKRL KLQPVVKPKA VKLCNFYLMG  60
RCQQGDLCKF SHDATPLTKS QPCKYFACDS CLKGDDCPFD HELSKYPCHN FHSKGSCHRG  120
DRCKFSHKIS TVEGSSTPIA SNLVSPLTSG KFNAGNQKIA SKKLTNASNP PKTATSSIKS  180
VLPKQSEGNL VKIAKEPMQI PNGIRFISFG NGLLESGKLP ANSLLPEKHG CSQQKPEKPL  240
ADGHKNAVCR SEKSLSKPQM EYSVSLPATN AFSGSYLKNK SFSSDPASRS LQSEASDASK  300
ILDEFLFGAT G
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
12228AKKRKRA
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_009412230.10.0PREDICTED: zinc finger CCCH domain-containing protein 65
TrEMBLM0TMV40.0M0TMV4_MUSAM; Uncharacterized protein
STRINGGSMUA_Achr8P05510_0010.0(Musa acuminata)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP88383743