PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
|
Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
---|---|---|---|---|---|---|---|---|---|
TF ID | GSMUA_Achr8P05170_001 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Zingiberales; Musaceae; Musa
|
||||||||
Family | bHLH | ||||||||
Protein Properties | Length: 201aa MW: 22137.6 Da PI: 9.5642 | ||||||||
Description | bHLH family protein | ||||||||
Gene Model |
|
Signature Domain? help Back to Top | |||||||
---|---|---|---|---|---|---|---|
No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | HLH | 39.3 | 1.2e-12 | 24 | 71 | 3 | 55 |
HHHHHHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHHH CS HLH 3 rahnerErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksLq 55 + h ++Er+RR+++ ++f L ++P + kK +Ka++L AveY+k Lq GSMUA_Achr8P05170_001 24 QEHIMAERKRREKLSQRFIALSAVVPGL-----KKTDKASVLGDAVEYLKRLQ 71 689*************************.....9******************9 PP |
Protein Features ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS50888 | 15.415 | 21 | 70 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
SuperFamily | SSF47459 | 1.96E-17 | 24 | 93 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
Gene3D | G3DSA:4.10.280.10 | 4.8E-17 | 24 | 85 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
Pfam | PF00010 | 2.5E-10 | 24 | 71 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
CDD | cd00083 | 3.99E-12 | 26 | 75 | No hit | No description |
SMART | SM00353 | 2.2E-14 | 27 | 76 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
Gene Ontology ? help Back to Top | ||||||
---|---|---|---|---|---|---|
GO Term | GO Category | GO Description | ||||
GO:0046983 | Molecular Function | protein dimerization activity |
Sequence ? help Back to Top |
---|
Protein Sequence Length: 201 aa Download sequence Send to blast |
MEALILGQGA KKVSTGAKPA AQNQEHIMAE RKRREKLSQR FIALSAVVPG LKKTDKASVL 60 GDAVEYLKRL QEKVKSLEDR VSKRNVEAAV LVKRSQLCAD DDDGSPGDES FIEGQGGQSL 120 PEIEARVCEK AILIKIHCEN RKGVLVKALS EIETLHLRVM NTSVVPFSGS SLDITVMEEG 180 FSMTAKDLVK KLNSAFRQFM R |
3D Structure ? help Back to Top | ||||||
---|---|---|---|---|---|---|
PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
5gnj_A | 4e-14 | 26 | 74 | 9 | 57 | Transcription factor MYC2 |
5gnj_B | 4e-14 | 26 | 74 | 9 | 57 | Transcription factor MYC2 |
5gnj_E | 4e-14 | 26 | 74 | 9 | 57 | Transcription factor MYC2 |
5gnj_F | 4e-14 | 26 | 74 | 9 | 57 | Transcription factor MYC2 |
5gnj_G | 4e-14 | 26 | 74 | 9 | 57 | Transcription factor MYC2 |
5gnj_I | 4e-14 | 26 | 74 | 9 | 57 | Transcription factor MYC2 |
5gnj_M | 4e-14 | 26 | 74 | 9 | 57 | Transcription factor MYC2 |
5gnj_N | 4e-14 | 26 | 74 | 9 | 57 | Transcription factor MYC2 |
Search in ModeBase |
Nucleic Localization Signal ? help Back to Top | |||
---|---|---|---|
No. | Start | End | Sequence |
1 | 29 | 34 | ERKRRE |
2 | 30 | 35 | RKRREK |
Regulation -- Description ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Source | Description | |||||
UniProt | INDUCTION: By ethylene (ACC) and jasmonic acid (JA) treatments. {ECO:0000269|PubMed:12679534}. |
Regulation -- PlantRegMap ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
---|---|---|---|---|---|---|---|
Source | Hit ID | E-value | Description | ||||
Refseq | XP_009412275.1 | 1e-141 | PREDICTED: transcription factor bHLH18-like | ||||
Swissprot | Q9T072 | 2e-54 | BH025_ARATH; Transcription factor bHLH25 | ||||
TrEMBL | M0TMS0 | 1e-143 | M0TMS0_MUSAM; Uncharacterized protein | ||||
STRING | GSMUA_Achr8P05170_001 | 1e-144 | (Musa acuminata) |
Orthologous Group ? help Back to Top | |||
---|---|---|---|
Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Monocots | OGMP4213 | 35 | 72 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Hit ID | E-value | Description | ||||
AT4G37850.1 | 9e-57 | bHLH family protein |