PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID GSMUA_Achr8P04340_001
Organism
Musa acuminata
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Zingiberales; Musaceae; Musa
Family YABBY
Protein Properties Length: 151aa    MW: 17159.8 Da    PI: 8.5012
Description YABBY family protein
Gene Model
Gene Model ID Type Source Coding Sequence
GSMUA_Achr8P04340_001genomeCIRADView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1YABBY52.91.5e-16270270
                  YABBY  2 dvfssseqvCyvqCnfCntilavsvPstslfkvvtvrCGhCtsllsvnlakasqllaaeshldeslkee 70
                           d++   e++Cyv+C++Cnt+lav vP+  l+  vtv CGhC +l  ++    +q +   shl+ sl+ +
  GSMUA_Achr8P04340_001  2 DLVCPIEHLCYVRCTYCNTLLAVGVPFRWLMDRVTVNCGHCHHLSFLSPGDVVQCICPISHLQMSLQGP 70
                           5667789***********************************998888889999999999999888766 PP
2YABBY69.31.4e-21102142122162
                  YABBY 122 rqrvPsaynrfikeeiqrikasnPdishreafsaaaknWah 162
                            + r+Psayn f++eeiqrika+ Pdi hreafs+aaknWa 
  GSMUA_Achr8P04340_001 102 KHRAPSAYNHFMREEIQRIKAAKPDIPHREAFSMAAKNWAN 142
                            68*************************************95 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF046901.6E-357142IPR006780YABBY protein
SuperFamilySSF470951.83E-792145IPR009071High mobility group box domain
Gene3DG3DSA:1.10.30.105.7E-5104143IPR009071High mobility group box domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0007275Biological Processmulticellular organism development
Sequence ? help Back to Top
Protein Sequence    Length: 151 aa     Download sequence    Send to blast
MDLVCPIEHL CYVRCTYCNT LLAVGVPFRW LMDRVTVNCG HCHHLSFLSP GDVVQCICPI  60
SHLQMSLQGP CFGSRREPPS LRRSSTSGEQ FKKAPFVLYD VKHRAPSAYN HFMREEIQRI  120
KAAKPDIPHR EAFSMAAKNW ANSDPRNSSD V
Functional Description ? help Back to Top
Source Description
UniProtRegulates carpel specification in flower development. Severe or intermediate mutation in DL causes complete or partial homeotic conversion of carpels into stamens without affecting the identities of other floral organs. Interacts antagonistically with class B genes and controls floral meristem determinacy. Regulates midrib formation in leaves probably by inducing cell proliferation in the central region of the leaf. {ECO:0000269|PubMed:14729915}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_018685534.13e-96PREDICTED: protein DROOPING LEAF-like
SwissprotQ76EJ04e-61YABDL_ORYSJ; Protein DROOPING LEAF
TrEMBLM0TMI71e-110M0TMI7_MUSAM; Uncharacterized protein
STRINGGSMUA_Achr8P04340_0011e-111(Musa acuminata)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP59513657
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G69180.16e-39YABBY family protein