![]() |
PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
|
Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
---|---|---|---|---|---|---|---|---|---|
TF ID | GSMUA_Achr8P03550_001 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Zingiberales; Musaceae; Musa
|
||||||||
Family | ERF | ||||||||
Protein Properties | Length: 216aa MW: 23014.9 Da PI: 7.03 | ||||||||
Description | ERF family protein | ||||||||
Gene Model |
|
Signature Domain? help Back to Top | |||||||
---|---|---|---|---|---|---|---|
No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | AP2 | 65.9 | 8e-21 | 16 | 65 | 2 | 55 |
AP2 2 gykGVrwdkkrgrWvAeIrdpsengkrkrfslgkfgtaeeAakaaiaarkkleg 55 +++GVr ++ +gr++AeIrdp++ + r++lg+f+taeeAa+a++aa+++++g GSMUA_Achr8P03550_001 16 HFRGVRKRP-WGRYAAEIRDPVK---KSRVWLGTFDTAEEAARAYDAAAREFRG 65 69*******.**********654...5*************************98 PP |
Protein Features ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS51032 | 24.026 | 16 | 73 | IPR001471 | AP2/ERF domain |
Pfam | PF00847 | 1.3E-13 | 16 | 65 | IPR001471 | AP2/ERF domain |
SuperFamily | SSF54171 | 7.85E-23 | 16 | 74 | IPR016177 | DNA-binding domain |
SMART | SM00380 | 2.0E-37 | 16 | 79 | IPR001471 | AP2/ERF domain |
Gene3D | G3DSA:3.30.730.10 | 1.7E-32 | 16 | 73 | IPR001471 | AP2/ERF domain |
CDD | cd00018 | 1.53E-18 | 16 | 73 | No hit | No description |
PRINTS | PR00367 | 4.2E-11 | 17 | 28 | IPR001471 | AP2/ERF domain |
PRINTS | PR00367 | 4.2E-11 | 39 | 55 | IPR001471 | AP2/ERF domain |
Gene Ontology ? help Back to Top | ||||||
---|---|---|---|---|---|---|
GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0003677 | Molecular Function | DNA binding | ||||
GO:0003700 | Molecular Function | transcription factor activity, sequence-specific DNA binding |
Sequence ? help Back to Top |
---|
Protein Sequence Length: 216 aa Download sequence Send to blast |
MLRLVDPNEN VCRREHFRGV RKRPWGRYAA EIRDPVKKSR VWLGTFDTAE EAARAYDAAA 60 REFRGPKAKT NFPFPDACIS PSPSPVGVAS GGGGSGSPSS QSSTIESSGP EEAARAPYHP 120 AIPAAQPLLF FNAIARSETS PVSEVAVTGY HRHLPLCPPM IVACFQPPPA VVAQSDSDSS 180 SVVDPPPDHR SPPPAPASKA FFLDLDLNLP PPAEVA |
3D Structure ? help Back to Top | ||||||
---|---|---|---|---|---|---|
PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
2gcc_A | 5e-21 | 15 | 74 | 4 | 64 | ATERF1 |
3gcc_A | 5e-21 | 15 | 74 | 4 | 64 | ATERF1 |
Search in ModeBase |
Regulation -- PlantRegMap ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Source | Hit ID | E-value | Description | |||
GenBank | FP096813 | 3e-42 | FP096813.1 Phyllostachys edulis cDNA clone: bphylf044i05, full insert sequence. | |||
GenBank | FP101071 | 3e-42 | FP101071.1 Phyllostachys edulis cDNA clone: bphylf052m18, full insert sequence. |
Annotation -- Protein ? help Back to Top | |||||||
---|---|---|---|---|---|---|---|
Source | Hit ID | E-value | Description | ||||
Refseq | XP_009412456.1 | 1e-89 | PREDICTED: ethylene-responsive transcription factor 4-like | ||||
TrEMBL | M0TMA7 | 1e-152 | M0TMA7_MUSAM; Uncharacterized protein | ||||
STRING | GSMUA_Achr8P03550_001 | 1e-153 | (Musa acuminata) |
Orthologous Group ? help Back to Top | |||
---|---|---|---|
Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Monocots | OGMP103 | 37 | 465 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Hit ID | E-value | Description | ||||
AT5G44210.1 | 4e-22 | erf domain protein 9 |