PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | GSMUA_Achr8P00510_001 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Zingiberales; Musaceae; Musa
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Family | Trihelix | ||||||||
Protein Properties | Length: 320aa MW: 36036.8 Da PI: 4.8093 | ||||||||
Description | Trihelix family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | trihelix | 66 | 8e-21 | 24 | 104 | 1 | 75 |
trihelix 1 rWtkqevlaLiearremeerlr.....rgklkkplWeevskkmrergferspkqCkekwenlnkrykkikegekkr.tses 75 rWt++e+++L+ea+r e r r r+++ +++We+vs+++r++g+ r+ qC+++w+nl+ ++kk++++e+++ ++ GSMUA_Achr8P00510_001 24 RWTRREIMVLVEAKRAAEGRGRgargpRSAAGETKWEWVSAYCRRKGVDRGMLQCRKRWSNLACDFKKVRAWEGGEgAAAG 104 8**************99999996544456799*****************************************98633333 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS50090 | 6.051 | 24 | 86 | IPR017877 | Myb-like domain |
Pfam | PF13837 | 1.5E-11 | 24 | 110 | No hit | No description |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0045892 | Biological Process | negative regulation of transcription, DNA-templated | ||||
GO:0050777 | Biological Process | negative regulation of immune response | ||||
GO:0071219 | Biological Process | cellular response to molecule of bacterial origin | ||||
GO:0005634 | Cellular Component | nucleus | ||||
GO:0003677 | Molecular Function | DNA binding | ||||
GO:0042803 | Molecular Function | protein homodimerization activity |
Sequence ? help Back to Top |
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Protein Sequence Length: 320 aa Download sequence Send to blast |
MADGVNGGGG GDGGSASRPH RLPRWTRREI MVLVEAKRAA EGRGRGARGP RSAAGETKWE 60 WVSAYCRRKG VDRGMLQCRK RWSNLACDFK KVRAWEGGEG AAAGESFWAM RNDCRRDRRL 120 PGFFDKEVFD ILNRTVLNEL EAEEEEEEAE VKVRDGGEGE NEKEEDEVEV EEEEAVFDSG 180 RTAADNGLFS DCEYENGMGG QERLPPPIAV TPISERKFEP FQQEFSDPGI INDRQPANDH 240 ETQSSQGLKR RRISPEEGSS NFDNQLIKII ERNNKMIVSH FNAQNANLQL ERDQRREQAN 300 SLLDVLNKLV DAVGRIADKL |
Nucleic Localization Signal ? help Back to Top | |||
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No. | Start | End | Sequence |
1 | 248 | 252 | KRRRI |
Binding Motif ? help Back to Top | |||
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Motif ID | Method | Source | Motif file |
MP00288 | DAP | Transfer from AT2G33550 | Download |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | Retrieve |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_009413005.1 | 0.0 | PREDICTED: trihelix transcription factor ASR3-like | ||||
TrEMBL | M0TLF3 | 0.0 | M0TLF3_MUSAM; Uncharacterized protein | ||||
STRING | GSMUA_Achr8P00510_001 | 0.0 | (Musa acuminata) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Monocots | OGMP3915 | 26 | 48 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT2G33550.1 | 6e-54 | Trihelix family protein |