PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID GSMUA_Achr7P27600_001
Organism
Musa acuminata
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Zingiberales; Musaceae; Musa
Family bHLH
Protein Properties Length: 334aa    MW: 36559.2 Da    PI: 5.7372
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
GSMUA_Achr7P27600_001genomeCIRADView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH37.54.2e-12156203355
                            HHHHHHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHHH CS
                    HLH   3 rahnerErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksLq 55 
                            + h ++Er+RR+++ ++f  L  ++P +     kK++Ka++L  A++Y+k+L+
  GSMUA_Achr7P27600_001 156 KEHIIAERKRREKLSQRFIALSAIVPGL-----KKMDKASVLGDAIKYLKQLE 203
                            5799************************.....9*****************96 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5088815.535153202IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SuperFamilySSF474592.49E-16155217IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PfamPF000106.5E-10156203IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene3DG3DSA:4.10.280.102.7E-16157215IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
CDDcd000831.19E-12158207No hitNo description
SMARTSM003531.7E-13159208IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PROSITE profilePS516718.948264334IPR002912ACT domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0008152Biological Processmetabolic process
GO:0016597Molecular Functionamino acid binding
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 334 aa     Download sequence    Send to blast
MEAPAAEWYS DAGMGGNFFD QWDVIDQFTA QEIAAALEQD LQRSFSSESY NSLPADQPPA  60
SAERPKKTLK AGSWSSCTTE QNSALVPNAS SPSILSFGNP DSPSDQNNIY GGLVRVVKPE  120
KEMDALVHHG SKRNYEATVG QGSKGVNTGT RSTYHKEHII AERKRREKLS QRFIALSAIV  180
PGLKKMDKAS VLGDAIKYLK QLEEKVKILE DQAAKRTVES AVLVKKSQLC ADDDSSSCDE  240
NFDGQQCGDS LQEIEAKMSE KAVLVKIHCE NRKGVLVKAL SEIEKLHLSV VNTSVIPFAG  300
SSLDITVMAQ IEEGFDMTVT DLVKKLNSAF RKLT
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5gnj_A3e-14158206957Transcription factor MYC2
5gnj_B3e-14158206957Transcription factor MYC2
5gnj_E3e-14158206957Transcription factor MYC2
5gnj_F3e-14158206957Transcription factor MYC2
5gnj_G3e-14158206957Transcription factor MYC2
5gnj_I3e-14158206957Transcription factor MYC2
5gnj_M3e-14158206957Transcription factor MYC2
5gnj_N3e-14158206957Transcription factor MYC2
Search in ModeBase
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1161166ERKRRE
2162167RKRREK
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_009411335.10.0PREDICTED: transcription factor bHLH18-like isoform X2
RefseqXP_018684176.10.0PREDICTED: transcription factor bHLH18-like isoform X2
TrEMBLM0TL960.0M0TL96_MUSAM; Uncharacterized protein
STRINGGSMUA_Achr7P27600_0010.0(Musa acuminata)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP42133572
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G37850.13e-65bHLH family protein