PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID GSMUA_Achr7P25960_001
Organism
Musa acuminata
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Zingiberales; Musaceae; Musa
Family C2H2
Protein Properties Length: 592aa    MW: 62255.6 Da    PI: 8.6922
Description C2H2 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
GSMUA_Achr7P25960_001genomeCIRADView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-C2H216.91.7e-057597123
                           EEETTTTEEESSHHHHHHHHHHT CS
                zf-C2H2  1 ykCpdCgksFsrksnLkrHirtH 23
                           ++C++C+k F r  nL+ H r H
  GSMUA_Achr7P25960_001 75 FVCEICNKGFQRDQNLQLHRRGH 97
                           89*******************88 PP
2zf-C2H2110.0013151173123
                            EEETTTTEEESSHHHHHHHHHHT CS
                zf-C2H2   1 ykCpdCgksFsrksnLkrHirtH 23 
                            +kC +C+k +  +s+ k H +++
  GSMUA_Achr7P25960_001 151 WKCDKCSKKYAVQSDWKAHSKVC 173
                            58*****************9877 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:3.30.160.602.0E-57497IPR013087Zinc finger C2H2-type/integrase DNA-binding domain
SuperFamilySSF576679.53E-77497No hitNo description
SMARTSM003550.0177597IPR015880Zinc finger, C2H2-like
PROSITE profilePS5015710.9497597IPR007087Zinc finger, C2H2
PROSITE patternPS0002807797IPR007087Zinc finger, C2H2
SMARTSM00355250116146IPR015880Zinc finger, C2H2-like
Gene3DG3DSA:3.30.160.600.001139171IPR013087Zinc finger C2H2-type/integrase DNA-binding domain
SuperFamilySSF576679.53E-7146171No hitNo description
SMARTSM00355150151171IPR015880Zinc finger, C2H2-like
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003676Molecular Functionnucleic acid binding
GO:0046872Molecular Functionmetal ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 592 aa     Download sequence    Send to blast
MELENSSVMT VSNSGSGEAS VSSSGHLQPS ALQNTDPPPP PIPVVKKKRN LPGTPDPEAE  60
VIALSPKTLM ATNRFVCEIC NKGFQRDQNL QLHRRGHNLP WKLRQRTGKE VRKRVYVCPE  120
TSCVHHDPSR ALGDLTGIKK HFCRKHGEKK WKCDKCSKKY AVQSDWKAHS KVCGTREYRC  180
DCGTLFSRRD SFITHRAFCD ALAEESAKTG AKPQAADGKA AATQDGAAAA AAGQDAIAAT  240
AETAPAAVMA AALPPQQVTP LERQGGWFSS FVLLCPSFRV LFWTAVECWS CFVPSKGLSD  300
SKLSIAIDEL KGMESEVARN LLISMASLLP EKPTALLQYM PPLSASLANT SGVTTTSNSS  360
SSSSSSSSTS LFASLFASAT AATAAGHGTA TLSDLMGAMG QVDRPFVEPP SLCLATNGRP  420
APLFSPQAQG HDRRPFAPPP PSPHMSATAL LQKAAQMGSA ATGSSFLRGF GLDAAPSGQQ  480
ESLQDSSLRW GHHHHAQQQQ SETEPSPMLT AGLGLGLPYE PDLMMGSSQL FGPKPATLDF  540
LGLGMGPVGG TPNGGLSALM TSIGGGGLNM GPGTATGGRV GSERKPTSPA IR
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5b3h_C3e-34147211367Zinc finger protein JACKDAW
5b3h_F3e-34147211367Zinc finger protein JACKDAW
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtTranscription factor that acts as a positive regulator of gibberellin (GA) action, homeostasis and signaling. GA converts the GAF1 complex from transcriptional activator to repressor via the degradation of DELLA proteins. {ECO:0000269|PubMed:25035403}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAK3759901e-151AK375990.1 Hordeum vulgare subsp. vulgare mRNA for predicted protein, complete cds, clone: NIASHv3111P12.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_020690375.11e-175zinc finger protein GAI-ASSOCIATED FACTOR 1 isoform X1
SwissprotQ9SCQ61e-117IDD2_ARATH; Zinc finger protein GAI-ASSOCIATED FACTOR 1
TrEMBLM0TKT20.0M0TKT2_MUSAM; Uncharacterized protein
STRINGGSMUA_Achr7P25960_0010.0(Musa acuminata)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP20238320
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G50700.11e-101indeterminate(ID)-domain 2
Publications ? help Back to Top
  1. Fukazawa J, et al.
    DELLAs function as coactivators of GAI-ASSOCIATED FACTOR1 in regulation of gibberellin homeostasis and signaling in Arabidopsis.
    Plant Cell, 2014. 26(7): p. 2920-38
    [PMID:25035403]
  2. Moreno-Risueno MA, et al.
    Transcriptional control of tissue formation throughout root development.
    Science, 2015. 350(6259): p. 426-30
    [PMID:26494755]
  3. Khare D, et al.
    Root avoidance of toxic metals requires the GeBP-LIKE 4 transcription factor in Arabidopsis thaliana.
    New Phytol., 2017. 213(3): p. 1257-1273
    [PMID:27768815]