PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Protein Features |

3D Structure |

Function |

Regulation |

Orthologous Group |

Basic Information? help Back to Top

TF ID

GSMUA_Achr7P23710_001

Organism

Musa acuminata

Taxonomic ID

4641

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Zingiberales; Musaceae; Musa

Family

LBD

Protein Properties

Length: 196aa MW: 20906.7 Da PI: 9.0289

Description

LBD family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
GSMUA_Achr7P23710_001	genome	CIRAD	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	DUF260	81.3	1.5e-25	16	73	1	58
DUF260 1 aCaaCkvlrrkCakdCvlapyfpaeqpkkfanvhklFGasnvlkllkalpeeeredam 58 +CaaCk+lrrkC++dCv+apyfp +qp+kf vh++FGasnv+kll+++++ +reda GSMUA_Achr7P23710_001 16 PCAACKFLRRKCQPDCVFAPYFPPDQPQKFVQVHRVFGASNVTKLLNEVNPYQREDAH 73 7*****************************************************9985 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
PROSITE profile	PS50891	16.322	15	116	IPR004883	Lateral organ boundaries, LOB
Pfam	PF03195	3.8E-25	16	73	IPR004883	Lateral organ boundaries, LOB

Sequence ? help Back to Top
Protein Sequence Length: 196 aa Download sequence Send to blast
MVSVAASSSP STASSPCAAC KFLRRKCQPD CVFAPYFPPD QPQKFVQVHR VFGASNVTKL 60 LNEVNPYQRE DAHQLRQLQL DLAFAMSELS KYQSAAAAAV GHRFTDVNLP IGAAGIGFGL 120 EHFLPVATRD ANHHRHTMVR NCDADTSVAK LRASGGYVAG RAAAWTASAS SLMPLNGQST 180 KPSTAGVDER PAIAPL

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
5ly0_A	5e-31	5	72	1	67	LOB family transfactor Ramosa2.1
5ly0_B	5e-31	5	72	1	67	LOB family transfactor Ramosa2.1
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Functional Description ? help Back to Top
Source	Description
UniProt	Promotes the switch from proliferation to differentiation in the embryo sac. Negative regulator of cell proliferation in the adaxial side of leaves. Regulates the formation of a symmetric lamina and the establishment of venation. Interacts directly with RS2 (rough sheath 2) to repress some knox homeobox genes. {ECO:0000269\|PubMed:17209126}.

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Nucleotide ? help Back to Top
Source	Hit ID	E-value	Description
GenBank	AK373607	1e-53	AK373607.1 Hordeum vulgare subsp. vulgare mRNA for predicted protein, complete cds, clone: NIASHv3036G24.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_018684439.1	1e-110	PREDICTED: LOB domain-containing protein 6-like isoform X2
Swissprot	Q32SG3	1e-42	LBD6_MAIZE; LOB domain-containing protein 6
TrEMBL	M0TK57	1e-143	M0TK57_MUSAM; Uncharacterized protein
STRING	GSMUA_Achr7P23710_001	1e-143	(Musa acuminata)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Monocots	OGMP2267	38	95

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT1G65620.4	1e-32	LBD family protein