PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | GSMUA_Achr7P23650_001 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Zingiberales; Musaceae; Musa
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Family | NAC | ||||||||
Protein Properties | Length: 348aa MW: 39350.2 Da PI: 8.9097 | ||||||||
Description | NAC family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | NAM | 161.4 | 3.5e-50 | 19 | 145 | 1 | 128 |
NAM 1 lppGfrFhPtdeelvveyLkkkvegkkleleevikevdiykvePwdLpkkvkaeekewyfFskrdkkyatgkrknratksgyWkatgk 88 l+pGfrFhPt+eel+ +yL++kvegk++++ e i+ +d+y+++Pw+Lp+ ++ +ekew+f+++rd+ky++g+r+nr+t+sgyWkatg GSMUA_Achr7P23650_001 19 LMPGFRFHPTEEELIEFYLRRKVEGKRFNV-ELITFLDLYRYDPWELPAYAAIGEKEWFFYVPRDRKYRNGDRPNRVTTSGYWKATGA 105 689***************************.89***************888889********************************** PP NAM 89 dkevlskkgelvglkktLvfykgrapkgektdWvmheyrl 128 d+ + +++++ +glkktLvfy+g+apkg +t+W+m+eyrl GSMUA_Achr7P23650_001 106 DRVIRNENNRSIGLKKTLVFYSGKAPKGLRTSWIMNEYRL 145 **************************************98 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SuperFamily | SSF101941 | 1.57E-55 | 18 | 170 | IPR003441 | NAC domain |
PROSITE profile | PS51005 | 55.192 | 19 | 170 | IPR003441 | NAC domain |
Pfam | PF02365 | 6.7E-25 | 21 | 145 | IPR003441 | NAC domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 348 aa Download sequence Send to blast |
MVIVASAMGA GDGHEHDLLM PGFRFHPTEE ELIEFYLRRK VEGKRFNVEL ITFLDLYRYD 60 PWELPAYAAI GEKEWFFYVP RDRKYRNGDR PNRVTTSGYW KATGADRVIR NENNRSIGLK 120 KTLVFYSGKA PKGLRTSWIM NEYRLPQSET DQYRKIFLQV EISICRVYKR PGVEDRPRLP 180 GTLGSKPSSS RGTGMNRKHN TSHHQIGGDS QEVRDGSSTS LPSSSLQPKP TVHGSTTASV 240 ASLSSTTSTE EDGTSFLQSN NMSGVTPTCS LLPHTSPSMA TQMIDELNRL VGFNQNRMNN 300 PSQFLHPPSQ TQLQLPFNAL PMSLTTASDK LWEWSALQET GREYTDFE |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
1ut4_A | 1e-53 | 19 | 170 | 17 | 165 | NO APICAL MERISTEM PROTEIN |
1ut4_B | 1e-53 | 19 | 170 | 17 | 165 | NO APICAL MERISTEM PROTEIN |
1ut7_A | 1e-53 | 19 | 170 | 17 | 165 | NO APICAL MERISTEM PROTEIN |
1ut7_B | 1e-53 | 19 | 170 | 17 | 165 | NO APICAL MERISTEM PROTEIN |
4dul_A | 1e-53 | 19 | 170 | 17 | 165 | NAC domain-containing protein 19 |
4dul_B | 1e-53 | 19 | 170 | 17 | 165 | NAC domain-containing protein 19 |
Search in ModeBase |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_009410724.1 | 0.0 | PREDICTED: NAC domain-containing protein 35-like isoform X1 | ||||
TrEMBL | M0TK51 | 0.0 | M0TK51_MUSAM; Uncharacterized protein | ||||
STRING | GSMUA_Achr7P23650_001 | 0.0 | (Musa acuminata) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Monocots | OGMP7706 | 36 | 50 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT2G02450.1 | 1e-102 | NAC domain containing protein 35 |