PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID GSMUA_Achr7P23040_001
Organism
Musa acuminata
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Zingiberales; Musaceae; Musa
Family B3
Protein Properties Length: 733aa    MW: 81682.8 Da    PI: 8.9255
Description B3 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
GSMUA_Achr7P23040_001genomeCIRADView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1B360.62.8e-19586683296
                            EEE-..-HHHHTT-EE--HHH.HTT..---..--SEEEEEE.TTS-EEEEEE....EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE CS
                     B3   2 fkvltpsdvlksgrlvlpkkfaeeh..ggkkeesktltled.esgrsWevkliy..rkksgryvltkGWkeFvkangLkegDfvvFkl 84 
                            +kvl++sdv+++gr+vlpkk ae+h  ++  + ++ + +ed  ++++W++++++  ++ks++y+l+ ++ +Fv++ngL+egDf+v++ 
  GSMUA_Achr7P23040_001 586 QKVLKQSDVGSLGRIVLPKKEAETHlpELGARDGISIPMEDiGTSQVWNMRYRFwpNNKSRMYLLE-NTGDFVRSNGLQEGDFIVIY- 671
                            79*************************777789999*****7777*******99777777777777.********************. PP

                            -SS.SEE..EEEE CS
                     B3  85 dgr.sefelvvkv 96 
                             ++ ++++++++ 
  GSMUA_Achr7P23040_001 672 -SDvKCGKYMIRG 683
                            .566999888765 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:2.40.330.103.8E-27579691IPR015300DNA-binding pseudobarrel domain
CDDcd100151.87E-34583684No hitNo description
SuperFamilySSF1019361.18E-22584680IPR015300DNA-binding pseudobarrel domain
SMARTSM010196.4E-19585687IPR003340B3 DNA binding domain
PROSITE profilePS5086310.419585687IPR003340B3 DNA binding domain
PfamPF023621.1E-15586682IPR003340B3 DNA binding domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0009657Biological Processplastid organization
GO:0009733Biological Processresponse to auxin
GO:0009737Biological Processresponse to abscisic acid
GO:0009793Biological Processembryo development ending in seed dormancy
GO:0031930Biological Processmitochondria-nucleus signaling pathway
GO:0045893Biological Processpositive regulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0005829Cellular Componentcytosol
GO:0001076Molecular Functiontranscription factor activity, RNA polymerase II transcription factor binding
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 733 aa     Download sequence    Send to blast
MKIWKRERER EKESGRKGRF PFYDYCFLPP RRRQQLLLLS LQIYLRAHAR ALLLHLRRRL  60
LSAVRFILVH VSSLQSTIME RKSKRKQREE LRVPKEVDKT MADHEVEEEE KMLAGFDAAG  120
DHPGVDEIVL DMDGEDLIFA EDTFPSLPDF SCLSSPSPST LHAKNTVLSP CSSTSSTSSC  180
WSFLQVPYGG RVADSSEFSS DGLDILGDID LLDLSIDPWE PCSLFHAGES STAVDNGSEA  240
IVDRAMQPCQ VAEEASSEGH GEGVQQRQQL EDTSSDELAR VFLDWLRSNK DSISAEDLRS  300
IKLKRATIEC ADRRLGRTKH GRMQLLKLIL TWVQNSHLQR KRHRPTSSDD HQPRPFPNNC  360
NCSTADQNPA AWNPNSTDPA AGSTHPSLLA AYGIANGEMA YPGATAPYPY PHSCGTSSVV  420
VNSQPFSPTL DFVDPNAGPW SSQLASALPS MVPPQYSGGY ANQFLGHPMY HQGQHLPGLA  480
SATKEARKKR MARQRRLASL HHHRNHHNQS HLQHAHPHLG STEGAARNWA FWTNSSSSSH  540
KRNHLAETQT PPPAAQPQRR SPHGAASTSE KRQGWKGEKN LKFLLQKVLK QSDVGSLGRI  600
VLPKKEAETH LPELGARDGI SIPMEDIGTS QVWNMRYRFW PNNKSRMYLL ENTGDFVRSN  660
GLQEGDFIVI YSDVKCGKYM IRGVKVRQPA EAAGAPSGMN AEKKAHRRRN GLEKTGGADK  720
MRGNSIIHGD VSP
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
6j9b_A7e-375816911111B3 domain-containing transcription factor FUS3
6j9b_D7e-375816911111B3 domain-containing transcription factor FUS3
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtTranscriptional activator specifically required for expression of the maturation program in the seed development. Probably potentiates the response to the seed-specific hormone abscisic acid (ABA). May bind to DNA indirectly.
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00083PBMTransfer from AT3G24650Download
Motif logo
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_009411203.10.0PREDICTED: B3 domain-containing protein VP1-like
SwissprotP263071e-127VIV1_MAIZE; Regulatory protein viviparous-1
TrEMBLM0TJZ00.0M0TJZ0_MUSAM; Uncharacterized protein
STRINGGSMUA_Achr7P23040_0010.0(Musa acuminata)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP75293443
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G24650.11e-75B3 family protein
Publications ? help Back to Top
  1. Williamson JD,Scandalios JG
    Differential response of maize catalases to abscisic acid: Vp1 transcriptional activator is not required for abscisic acid-regulated Cat1 expression.
    Proc. Natl. Acad. Sci. U.S.A., 1992. 89(18): p. 8842-6
    [PMID:1388272]
  2. Hoecker U,Vasil IK,McCarty DR
    Integrated control of seed maturation and germination programs by activator and repressor functions of Viviparous-1 of maize.
    Genes Dev., 1995. 9(20): p. 2459-69
    [PMID:7590227]