PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

GSMUA_Achr7P22720_001

Organism

Musa acuminata

Taxonomic ID

4641

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Zingiberales; Musaceae; Musa

Family

C2H2

Protein Properties

Length: 281aa MW: 31974.9 Da PI: 10.1182

Description

C2H2 family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
GSMUA_Achr7P22720_001	genome	CIRAD	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	zf-C2H2	23.1	1.9e-07	92	114	1	23
EEETTTTEEESSHHHHHHHHHHT CS zf-C2H2 1 ykCpdCgksFsrksnLkrHirtH 23 ++C+ Cgk F+r nL+ H r H GSMUA_Achr7P22720_001 92 FVCEVCGKEFRRDQNLQIHRRGH 114 89*******************88 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
Gene3D	G3DSA:3.30.160.60	6.9E-7	92	114	IPR013087	Zinc finger C2H2-type/integrase DNA-binding domain
Pfam	PF12874	0.0084	92	114	No hit	No description
SuperFamily	SSF57667	5.11E-9	92	114	No hit	No description
SMART	SM00355	0.0049	92	114	IPR015880	Zinc finger, C2H2-like
PROSITE profile	PS50157	11.697	92	114	IPR007087	Zinc finger, C2H2
PROSITE pattern	PS00028	0	94	114	IPR007087	Zinc finger, C2H2
SMART	SM00355	75	139	169	IPR015880	Zinc finger, C2H2-like
Gene3D	G3DSA:3.30.160.60	2.6E-4	162	195	IPR013087	Zinc finger C2H2-type/integrase DNA-binding domain
SuperFamily	SSF57667	5.11E-9	169	194	No hit	No description
SMART	SM00355	270	174	194	IPR015880	Zinc finger, C2H2-like

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0003676	Molecular Function	nucleic acid binding
GO:0046872	Molecular Function	metal ion binding

Sequence ? help Back to Top
Protein Sequence Length: 281 aa Download sequence Send to blast
MCWFGPRHPQ MGGRLISLAR HIRRPHSQGP VSYSEFVHYH PNPNPNPNPS NDRDPLIDRR 60 PKRKRNLPGT PGKTLAEVIA LSPGTLLAAS SFVCEVCGKE FRRDQNLQIH RRGHNLPWNF 120 AAKKASSDEA AARARRRVYV CPEASCVYHD PSRALGDVTG IKKHYSRKHG EKKWECERCP 180 KKYAVRADWK AHTKICGTRE YECHCGTLFA SRKDSLLAHQ AACEATATTT TTAEEREAST 240 IIPYILIFIL LKIKIFYCVL FFLILSIQLI KISNIFNDKL K

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
5b3h_C	2e-22	170	225	3	57	Zinc finger protein JACKDAW
5b3h_F	2e-22	170	225	3	57	Zinc finger protein JACKDAW
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Functional Description ? help Back to Top
Source	Description
UniProt	Transcription factor that acts as a positive regulator of gibberellin (GA) action, homeostasis and signaling. GA converts the GAF1 complex from transcriptional activator to repressor via the degradation of DELLA proteins. {ECO:0000269\|PubMed:25035403}.

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_009410603.2	1e-107	PREDICTED: protein indeterminate-domain 9-like
Swissprot	Q9SCQ6	7e-77	IDD2_ARATH; Zinc finger protein GAI-ASSOCIATED FACTOR 1
TrEMBL	M0TJV8	0.0	M0TJV8_MUSAM; Uncharacterized protein
STRING	GSMUA_Achr7P22720_001	0.0	(Musa acuminata)

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT3G50700.1	2e-72	indeterminate(ID)-domain 2

Publications ? help Back to Top
Fukazawa J, et al. DELLAs function as coactivators of GAI-ASSOCIATED FACTOR1 in regulation of gibberellin homeostasis and signaling in Arabidopsis. Plant Cell, 2014. 26(7): p. 2920-38 [PMID:25035403] Moreno-Risueno MA, et al. Transcriptional control of tissue formation throughout root development. Science, 2015. 350(6259): p. 426-30 [PMID:26494755] Khare D, et al. Root avoidance of toxic metals requires the GeBP-LIKE 4 transcription factor in Arabidopsis thaliana. New Phytol., 2017. 213(3): p. 1257-1273 [PMID:27768815]