PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID GSMUA_Achr7P20530_001
Organism
Musa acuminata
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Zingiberales; Musaceae; Musa
Family C3H
Protein Properties Length: 299aa    MW: 31219.5 Da    PI: 9.5838
Description C3H family protein
Gene Model
Gene Model ID Type Source Coding Sequence
GSMUA_Achr7P20530_001genomeCIRADView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-CCCH24.74e-08103128227
                            -S---SGGGGTS--TTTTT-SS-SSS CS
                zf-CCCH   2 ktelCrffartGtCkyGdrCkFaHgp 27 
                            kt+ C+ +     Ck+G++C+FaHg+
  GSMUA_Achr7P20530_001 103 KTRMCNKYNTADGCKFGEKCHFAHGE 128
                            89**********************96 PP
2zf-CCCH36.48.8e-12266290126
                            --S---SGGGGTS--TTTTT-SS-SS CS
                zf-CCCH   1 yktelCrffartGtCkyGdrCkFaHg 26 
                            ykt+lC++f + G C +GdrC+FaHg
  GSMUA_Achr7P20530_001 266 YKTKLCDNFTK-GSCTFGDRCHFAHG 290
                            9**********.*************8 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM003564.83663IPR000571Zinc finger, CCCH-type
PROSITE profilePS5010312.0423664IPR000571Zinc finger, CCCH-type
SuperFamilySSF902291.02E-53762IPR000571Zinc finger, CCCH-type
Gene3DG3DSA:4.10.1000.103.2E-73861IPR000571Zinc finger, CCCH-type
Gene3DG3DSA:4.10.1000.104.6E-1498132IPR000571Zinc finger, CCCH-type
SuperFamilySSF902294.84E-8101132IPR000571Zinc finger, CCCH-type
SMARTSM003560.066101128IPR000571Zinc finger, CCCH-type
PROSITE profilePS5010313.056101129IPR000571Zinc finger, CCCH-type
PfamPF006422.5E-4103128IPR000571Zinc finger, CCCH-type
SuperFamilySSF547911.61E-15166244IPR004088K Homology domain, type 1
SMARTSM003227.4E-12171241IPR004087K Homology domain
Gene3DG3DSA:3.30.1370.107.8E-16172241IPR004088K Homology domain, type 1
PROSITE profilePS5008414.382172236IPR004088K Homology domain, type 1
PfamPF000132.0E-10174238IPR004088K Homology domain, type 1
CDDcd001051.34E-14174236No hitNo description
SuperFamilySSF902292.35E-9264296IPR000571Zinc finger, CCCH-type
Gene3DG3DSA:4.10.1000.105.1E-17264296IPR000571Zinc finger, CCCH-type
SMARTSM003563.9E-8265291IPR000571Zinc finger, CCCH-type
PROSITE profilePS5010316.802265292IPR000571Zinc finger, CCCH-type
PfamPF006422.3E-9266290IPR000571Zinc finger, CCCH-type
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003723Molecular FunctionRNA binding
GO:0046872Molecular Functionmetal ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 299 aa     Download sequence    Send to blast
MDARKRARAD GTTNGGSGAT GPKRIRETDS NPSGLGSKSK PCTKFFSTAG CPFGEGCHFL  60
HYVPGGIAAV SQMTNLGNPT VAAARNLMPP STIPNGLPSS AVKTRMCNKY NTADGCKFGE  120
KCHFAHGEWE LGKPIIPSHD GHMAPSMGGR FAANMEPPQP TGLAAATSFG ASATAKISVD  180
ASLAGAIIGK GGMNTKQICR ITGVKLAIRE HESDPNLRNI ELEGTFDQIK HASSMVRELI  240
VNVSSATSLP PKTSAAGAPN ALGSNYKTKL CDNFTKGSCT FGDRCHFAHG ASELRKTVL
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
128ARKRARA
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00113ampDAPTransfer from AT3G12130Download
Motif logo
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_009410334.10.0PREDICTED: zinc finger CCCH domain-containing protein 31
SwissprotQ7F8R01e-120C3H14_ORYSJ; Zinc finger CCCH domain-containing protein 14
TrEMBLM0TJ900.0M0TJ90_MUSAM; Uncharacterized protein
STRINGGSMUA_Achr7P20530_0010.0(Musa acuminata)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP125438127
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G12130.19e-80C3H family protein