PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID GSMUA_Achr7P20260_001
Organism
Musa acuminata
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Zingiberales; Musaceae; Musa
Family C2H2
Protein Properties Length: 408aa    MW: 43927.4 Da    PI: 7.4318
Description C2H2 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
GSMUA_Achr7P20260_001genomeCIRADView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-C2H213.70.00018115134221
                            EETTTTEEESSHHHHHHHHH CS
                zf-C2H2   2 kCpdCgksFsrksnLkrHir 21 
                            +Cp Cgk+F++  +L  H+r
  GSMUA_Achr7P20260_001 115 TCPECGKTFPSDKSLFGHLR 134
                            6*****************98 PP
2zf-C2H213.80.00017270292123
                            EEETTTTEEESSHHHHHHHHHHT CS
                zf-C2H2   1 ykCpdCgksFsrksnLkrHirtH 23 
                            y+C++C k+F ++  L  Hi +H
  GSMUA_Achr7P20260_001 270 YQCSICFKTFASHQALGGHIASH 292
                            9*******************998 PP
3zf-C2H214.69.5e-05326348123
                            EEETTTTEEESSHHHHHHHHHHT CS
                zf-C2H2   1 ykCpdCgksFsrksnLkrHirtH 23 
                            ++C++C+ +Fs+   L  H+r+H
  GSMUA_Achr7P20260_001 326 HRCTICNLTFSTGQALGGHMRRH 348
                            79********************9 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF576671.31E-9113136No hitNo description
SMARTSM003550.015114136IPR015880Zinc finger, C2H2-like
PROSITE profilePS5015710.201114141IPR007087Zinc finger, C2H2
Gene3DG3DSA:3.30.160.608.5E-4115136IPR013087Zinc finger C2H2-type/integrase DNA-binding domain
PfamPF139121.1E-7116138IPR007087Zinc finger, C2H2
PROSITE patternPS000280116136IPR007087Zinc finger, C2H2
SuperFamilySSF576671.31E-9265292No hitNo description
PfamPF139123.1E-6269292IPR007087Zinc finger, C2H2
SMARTSM003550.018270292IPR015880Zinc finger, C2H2-like
PROSITE profilePS5015710.699270297IPR007087Zinc finger, C2H2
PROSITE patternPS000280272292IPR007087Zinc finger, C2H2
SuperFamilySSF576675.46E-5325351No hitNo description
SMARTSM003550.0074326348IPR015880Zinc finger, C2H2-like
PfamPF139126.2E-10326348IPR007087Zinc finger, C2H2
PROSITE profilePS501579.64326353IPR007087Zinc finger, C2H2
PROSITE patternPS000280328348IPR007087Zinc finger, C2H2
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003676Molecular Functionnucleic acid binding
GO:0046872Molecular Functionmetal ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 408 aa     Download sequence    Send to blast
MEAHLMEGGS HYRTEGSVVR VEDRHDEKLP SKGPRFGDGR AAVDQEVVSP DSGDTETAYG  60
SGGVRGHQSV SSGDGELPGD EDSDDESHLR DDKTFDEGSG SSNRKHPNKG PKVPTCPECG  120
KTFPSDKSLF GHLRCHPERD YRGAIPPPGA RKKSQSNAYS SVARGPPVTK WSTPKKGGKE  180
AAVDEDSVVV VAKALLLLAD GKPWGQETPT VEKEAPETKQ FMNTRFGGTD VLADRSYGNE  240
VISSYNSGSK KRKIKEQAND SGTPTRCRRY QCSICFKTFA SHQALGGHIA SHNKNKSNVQ  300
EAPIAAENGC VHIAPNAVSK AATAEHRCTI CNLTFSTGQA LGGHMRRHFN ELQNQALSSS  360
AHSSESDKGA NHGMLQNGAP SSPANSSERY KRAIRGMLDF DLNEMPDL
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_009411160.10.0PREDICTED: uncharacterized protein LOC103992955
TrEMBLM0TJ630.0M0TJ63_MUSAM; Uncharacterized protein
STRINGGSMUA_Achr7P20260_0010.0(Musa acuminata)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP1943657
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G04340.18e-15zinc finger of Arabidopsis thaliana 6