PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID GSMUA_Achr7P14450_001
Organism
Musa acuminata
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Zingiberales; Musaceae; Musa
Family bHLH
Protein Properties Length: 330aa    MW: 35941.1 Da    PI: 5.9729
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
GSMUA_Achr7P14450_001genomeCIRADView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH14.56.4e-051972351255
                            HHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHHH CS
                    HLH  12 RRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksLq 55 
                            R +++ +++  L +l+ +      +K + a++L++A+ YI+ Lq
  GSMUA_Achr7P14450_001 197 RKEKLGDRITALHQLVSPF-----GKTDTASVLQEAIGYIRFLQ 235
                            6677889999999999998.....8******************9 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5088811.954185234IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SuperFamilySSF474593.53E-11195247IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
CDDcd000837.47E-7195239No hitNo description
Gene3DG3DSA:4.10.280.103.4E-8199242IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 330 aa     Download sequence    Send to blast
MMEGSPNCWS TNNMKPPPEL PFPLLPASSS PSVFPQNPQP SDTEISPWQD SHDLLESWCQ  60
LLLSSRGGLV GEEEKYGWTP FQTKKMMSSD DPRDEVLFPS ATAHIADMKQ EYSGSGYVHS  120
HGNEGIQVSR SAWGQILPAS SPRSCITTSF STNILDFSNM ARRQPDNSSE CNSTETAPNK  180
KARVQGSFSP KSTLKVRKEK LGDRITALHQ LVSPFGKTDT ASVLQEAIGY IRFLQSQIEA  240
LSSPYLQGSA SGNMRQPARG NTSCSLSEDP AQFSDGGGMK RSGPQDQERC EEPKKDLRSR  300
GLCLVPVSFT MHVGSDNGAD FWAPALGGGF
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_009409459.10.0PREDICTED: transcription factor bHLH68 isoform X1
SwissprotQ8S3D14e-67BH068_ARATH; Transcription factor bHLH68
TrEMBLM0THI20.0M0THI2_MUSAM; Uncharacterized protein
STRINGGSMUA_Achr7P14450_0010.0(Musa acuminata)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP2167817
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G29100.12e-69bHLH family protein
Publications ? help Back to Top
  1. Skinner MK,Rawls A,Wilson-Rawls J,Roalson EH
    Basic helix-loop-helix transcription factor gene family phylogenetics and nomenclature.
    Differentiation, 2010. 80(1): p. 1-8
    [PMID:20219281]
  2. Le Hir R, et al.
    AtbHLH68 transcription factor contributes to the regulation of ABA homeostasis and drought stress tolerance in Arabidopsis thaliana.
    Physiol Plant, 2017. 160(3): p. 312-327
    [PMID:28369972]
  3. Ezer D, et al.
    The G-Box Transcriptional Regulatory Code in Arabidopsis.
    Plant Physiol., 2017. 175(2): p. 628-640
    [PMID:28864470]