PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID GSMUA_Achr7P13620_001
Organism
Musa acuminata
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Zingiberales; Musaceae; Musa
Family C3H
Protein Properties Length: 262aa    MW: 28761.2 Da    PI: 7.2244
Description C3H family protein
Gene Model
Gene Model ID Type Source Coding Sequence
GSMUA_Achr7P13620_001genomeCIRADView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-CCCH23.78.5e-08126148426
                            ---SGGGGTS--TTTTT-SS-SS CS
                zf-CCCH   4 elCrffartGtCkyGdrCkFaHg 26 
                             +C +f++tG Ck+Gd C  aHg
  GSMUA_Achr7P13620_001 126 TPCADFRKTGGCKRGDACELAHG 148
                            69****************99998 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:4.10.1000.103.6E-6118150IPR000571Zinc finger, CCCH-type
SMARTSM003561.3E-4122149IPR000571Zinc finger, CCCH-type
SuperFamilySSF902294.87E-5122152IPR000571Zinc finger, CCCH-type
PROSITE profilePS5010312.145122150IPR000571Zinc finger, CCCH-type
PfamPF006425.7E-6126148IPR000571Zinc finger, CCCH-type
SMARTSM003567.1158181IPR000571Zinc finger, CCCH-type
PROSITE profilePS501036.756158182IPR000571Zinc finger, CCCH-type
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046872Molecular Functionmetal ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 262 aa     Download sequence    Send to blast
MMLIGRGIGH HNPTVQVPPW SPSDDPTGGN ATSSHLPVSG VATGDGLLDE ATLAALQLYL  60
GCEEEAAAEE APAVVDAYAS DEFRMYEFKV RRCARGRTHD WTECPLAHPG EKARRRDPRK  120
HRYSGTPCAD FRKTGGCKRG DACELAHGVF ECWLHPERYR TQPCKDSTAC RRRVCFFAHT  180
PDQLRVLPSQ HQQTTTSASA TAVESYDGSP LRQQSSMQSY LSKNFVCSTT ATLISPPKTP  240
TTAILDRAEA TPDVGWVSEL LK
Functional Description ? help Back to Top
Source Description
UniProtInvolved in leaf senescence delay. May repress jasmonic acid (JA) signaling role in promoting leaf senescence. May regulate panicle development and pollination/fertilization process. {ECO:0000269|PubMed:16778011}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_009409364.10.0PREDICTED: zinc finger CCCH domain-containing protein 2-like
SwissprotQ9FU271e-86C3H2_ORYSJ; Zinc finger CCCH domain-containing protein 2
TrEMBLM0TH990.0M0TH99_MUSAM; Uncharacterized protein
STRINGGSMUA_Achr7P13620_0010.0(Musa acuminata)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP15783493
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G19810.12e-72C3H family protein
Publications ? help Back to Top
  1. Kikuchi S, et al.
    Collection, mapping, and annotation of over 28,000 cDNA clones from japonica rice.
    Science, 2003. 301(5631): p. 376-9
    [PMID:12869764]
  2. Mebel AM,Kislov VV,Hayashi M
    Prediction of product branching ratios in the C(3P)+C2H2-->l-C3H+H/c-C3H+H/C3+H2 reaction using ab initio coupled clusters calculations extrapolated to the complete basis set combined with Rice-Ramsperger-Kassel-Marcus and radiationless transition theories.
    J Chem Phys, 2007. 126(20): p. 204310
    [PMID:17552765]
  3. Miyazawa T,Shibata A,Nakagawa K,Tsuzuki T
    Anti-angiogenic function of tocotrienol.
    Asia Pac J Clin Nutr, 2008. 17 Suppl 1: p. 253-6
    [PMID:18296349]