PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Home  TFext  BLAST  Prediction  Download  Help  About  Links  PlantRegMap
(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID GSMUA_Achr7P13540_001
Organism
Musa acuminata
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Zingiberales; Musaceae; Musa
Family C2H2
Protein Properties Length: 365aa    MW: 40161.7 Da    PI: 9.7003
Description C2H2 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
GSMUA_Achr7P13540_001genomeCIRADView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-C2H217.79.6e-066284123
                           EEETTTTEEESSHHHHHHHHHHT CS
                zf-C2H2  1 ykCpdCgksFsrksnLkrHirtH 23
                           ++C++C+k F r  nL+ H r H
  GSMUA_Achr7P13540_001 62 FVCEICNKGFQRDQNLQLHRRGH 84
                           89*******************88 PP
2zf-C2H212.40.00048138160123
                            EEETTTTEEESSHHHHHHHHHHT CS
                zf-C2H2   1 ykCpdCgksFsrksnLkrHirtH 23 
                            +kC++C+k +  +s+ k H + +
  GSMUA_Achr7P13540_001 138 WKCEKCSKKYAVQSDWKAHSKIC 160
                            58*****************9876 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF576672.48E-76184No hitNo description
Gene3DG3DSA:3.30.160.601.1E-56184IPR013087Zinc finger C2H2-type/integrase DNA-binding domain
PROSITE profilePS5015710.9496284IPR007087Zinc finger, C2H2
PfamPF121715.4E-56284IPR022755Zinc finger, double-stranded RNA binding
SMARTSM003550.0176284IPR015880Zinc finger, C2H2-like
PROSITE patternPS0002806484IPR007087Zinc finger, C2H2
SMARTSM00355110103133IPR015880Zinc finger, C2H2-like
Gene3DG3DSA:3.30.160.601.0E-4126159IPR013087Zinc finger C2H2-type/integrase DNA-binding domain
SuperFamilySSF576672.48E-7133158No hitNo description
SMARTSM00355140138158IPR015880Zinc finger, C2H2-like
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003676Molecular Functionnucleic acid binding
GO:0046872Molecular Functionmetal ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 365 aa     Download sequence    Send to blast
MSNLTSASGE ASVISSNHQS LFASSPNQIN PTKKRRNLPG NPDPDAEVIA LSPTTLMATN  60
RFVCEICNKG FQRDQNLQLH RRGHNLPWKL KQRSSKEVRK KVYICPEVTC VHHDPSRALG  120
DLTGIKKHFS RKHGEKKWKC EKCSKKYAVQ SDWKAHSKIC GTREYRCDCG TLFSRRDSFI  180
THRAFCDALA EESARAIAAN PLAPSHHPLL ANEANASIIG GNGIQQELSS NRERQHQQFP  240
PWLACQGPAS LNHLDLLPSP AYSSRSEQEC PRENLGVPHP PVPPPFFQPS ASSPHMSATA  300
LLQKAAMMGA TMSRPSHLGL TAPHTTTPPP LMQDMVIKTS LSSTPGFASR EAMESLRKEA  360
VGTMG
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5b3h_C2e-36134195364Zinc finger protein JACKDAW
5b3h_F2e-36134195364Zinc finger protein JACKDAW
Search in ModeBase
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
188100KLKQRSSKEVRKK
Functional Description ? help Back to Top
Source Description
UniProtProbable transcription factor. {ECO:0000305}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_009409356.10.0PREDICTED: protein indeterminate-domain 7
RefseqXP_018684530.10.0PREDICTED: protein indeterminate-domain 7
RefseqXP_018684531.10.0PREDICTED: protein indeterminate-domain 7
SwissprotQ8H1F51e-119IDD7_ARATH; Protein indeterminate-domain 7
TrEMBLM0TH910.0M0TH91_MUSAM; Uncharacterized protein
STRINGGSMUA_Achr7P13540_0010.0(Musa acuminata)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP20238320
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G66730.11e-101C2H2-like zinc finger protein
Publications ? help Back to Top
  1. Moreno-Risueno MA, et al.
    Transcriptional control of tissue formation throughout root development.
    Science, 2015. 350(6259): p. 426-30
    [PMID:26494755]