PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Zingiberales; Musaceae; Musa

Family

HD-ZIP

Protein Properties

Length: 252aa MW: 28673.3 Da PI: 4.6318

Description

HD-ZIP family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
GSMUA_Achr7P11760_001	genome	CIRAD	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	Homeobox	60.4	2.9e-19	48	101	3	56
--SS--HHHHHHHHHHHHHSSS--HHHHHHHHHHCTS-HHHHHHHHHHHHHHHH CS Homeobox 3 kRttftkeqleeLeelFeknrypsaeereeLAkklgLterqVkvWFqNrRakek 56 k+++++ +q+++Le+ Fe +++++ e++ +LA+ lgL+ rqV vWFqNrRa++k GSMUA_Achr7P11760_001 48 KKRRLSVDQVKALEKNFEVENKLDPERKVRLARDLGLQPRQVAVWFQNRRARWK 101 456899***********************************************9 PP
2	HD-ZIP_I/II	126.5	1.2e-40	47	139	1	93
HD-ZIP_I/II 1 ekkrrlskeqvklLEesFeeeekLeperKvelareLglqprqvavWFqnrRARtktkqlEkdyeaLkraydalkeenerLekeveeLr 88 ekkrrls +qvk+LE++Fe e+kL+perKv+lar+LglqprqvavWFqnrRAR+ktkqlE+dy aLk+ +d lk + ++L++++e L GSMUA_Achr7P11760_001 47 EKKRRLSVDQVKALEKNFEVENKLDPERKVRLARDLGLQPRQVAVWFQNRRARWKTKQLERDYGALKSLHDDLKLDCDALRRDKELLL 134 69*************************************************************************************9 PP HD-ZIP_I/II 89 eelke 93 +e++e GSMUA_Achr7P11760_001 135 AEIRE 139 99876 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
SuperFamily	SSF46689	2.1E-19	41	105	IPR009057	Homeodomain-like
PROSITE profile	PS50071	16.989	43	103	IPR001356	Homeobox domain
SMART	SM00389	1.0E-18	46	107	IPR001356	Homeobox domain
Pfam	PF00046	1.5E-16	48	101	IPR001356	Homeobox domain
CDD	cd00086	2.70E-17	48	104	No hit	No description
Gene3D	G3DSA:1.10.10.60	3.8E-20	50	110	IPR009057	Homeodomain-like
PRINTS	PR00031	2.0E-5	74	83	IPR000047	Helix-turn-helix motif
PROSITE pattern	PS00027	0	78	101	IPR017970	Homeobox, conserved site
PRINTS	PR00031	2.0E-5	83	99	IPR000047	Helix-turn-helix motif
Pfam	PF02183	2.5E-14	103	144	IPR003106	Leucine zipper, homeobox-associated

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0006355	Biological Process	regulation of transcription, DNA-templated
GO:0003700	Molecular Function	transcription factor activity, sequence-specific DNA binding
GO:0043565	Molecular Function	sequence-specific DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 252 aa Download sequence Send to blast
MKQVRWRFVI QVEEKGKYEA VLVDGIEEVE CEEEEELCSN GPSGLGEKKR RLSVDQVKAL 60 EKNFEVENKL DPERKVRLAR DLGLQPRQVA VWFQNRRARW KTKQLERDYG ALKSLHDDLK 120 LDCDALRRDK ELLLAEIREL KAKLADTGMD ATQSEIIKAV EEARAPLIYK DGASDSDSSV 180 VFNDETSPYG GLVLHQNCLM EFKPRSSSLS FENKAMDEGF LGGDELCSSL FSEQPAPSLS 240 WYCSDPCEYK GD

Nucleic Localization Signal ? help Back to Top

No.	Start	End	Sequence
1	95	103	RRARWKTKQ

Functional Description ? help Back to Top
Source	Description
UniProt	Probable transcription factor. {ECO:0000250}.
UniProt	Probable transcription factor. {ECO:0000250}.

Regulation -- Description ? help Back to Top
Source	Description
UniProt	INDUCTION: Down-regulated in leaves by drought stress. {ECO:0000269\|PubMed:17999151}.

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_009409169.1	1e-175	PREDICTED: homeobox-leucine zipper protein HOX13-like
Swissprot	A2YWC0	1e-55	HOX20_ORYSI; Homeobox-leucine zipper protein HOX20
Swissprot	Q6Z248	1e-55	HOX20_ORYSJ; Homeobox-leucine zipper protein HOX20
TrEMBL	M0TGR4	0.0	M0TGR4_MUSAM; Uncharacterized protein
STRING	GSMUA_Achr7P11760_001	0.0	(Musa acuminata)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Monocots	OGMP3009	34	82

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT4G40060.1	4e-56	homeobox protein 16

Publications ? help Back to Top
Kikuchi S, et al. Collection, mapping, and annotation of over 28,000 cDNA clones from japonica rice. Science, 2003. 301(5631): p. 376-9 [PMID:12869764]