 |
Plant Transcription
Factor Database
|
Transcription Factor Information
|
Basic
Information? help
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| TF ID |
GSMUA_Achr7P11600_001 |
| Organism |
|
| Taxonomic ID |
|
| Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Zingiberales; Musaceae; Musa
|
| Family |
HD-ZIP |
| Protein Properties |
Length: 276aa MW: 31647.3 Da PI: 6.5108 |
| Description |
HD-ZIP family protein |
| Gene Model |
| Gene Model ID |
Type |
Source |
Coding Sequence |
| GSMUA_Achr7P11600_001 | genome | CIRAD | View CDS |
|
| Signature Domain? help Back to Top |
 |
| No. |
Domain |
Score |
E-value |
Start |
End |
HMM Start |
HMM End |
| 1 | Homeobox | 57.6 | 2.2e-18 | 75 | 128 | 3 | 56 |
--SS--HHHHHHHHHHHHHSSS--HHHHHHHHHHCTS-HHHHHHHHHHHHHHHH CS
Homeobox 3 kRttftkeqleeLeelFeknrypsaeereeLAkklgLterqVkvWFqNrRakek 56
k++++t eq+++Le+ Fe +++ e++ +LA+ lg++ rqV +WFqNrRa++k
GSMUA_Achr7P11600_001 75 KKRRLTVEQVRTLEKNFELGNKLEPERKMQLARTLGMQPRQVAIWFQNRRARWK 128
45689************************************************9 PP
|
| 2 | HD-ZIP_I/II | 131.2 | 4e-42 | 74 | 166 | 1 | 93 |
HD-ZIP_I/II 1 ekkrrlskeqvklLEesFeeeekLeperKvelareLglqprqvavWFqnrRARtktkqlEkdyeaLkraydalkeenerLekeveeLr 88
ekkrrl+ eqv++LE++Fe +kLeperK++lar+Lg+qprqva+WFqnrRAR+ktkqlEkdy++Lkr+++a+k+ene+L++++++L+
GSMUA_Achr7P11600_001 74 EKKRRLTVEQVRTLEKNFELGNKLEPERKMQLARTLGMQPRQVAIWFQNRRARWKTKQLEKDYDVLKRHFEAIKSENEALKAHNNQLQ 161
69************************************************************************************** PP
HD-ZIP_I/II 89 eelke 93
+e+++
GSMUA_Achr7P11600_001 162 AEIMT 166
99975 PP
|
| Gene Ontology ? help Back to Top |
| GO Term |
GO Category |
GO Description |
| GO:0006355 | Biological Process | regulation of transcription, DNA-templated |
| GO:0009744 | Biological Process | response to sucrose |
| GO:0048826 | Biological Process | cotyledon morphogenesis |
| GO:0080022 | Biological Process | primary root development |
| GO:0003700 | Molecular Function | transcription factor activity, sequence-specific DNA binding |
| GO:0043565 | Molecular Function | sequence-specific DNA binding |
| Sequence ? help Back to Top |
| Protein Sequence Length: 276 aa
Download sequence Send
to blast |
MASSFFHHGF MLQMQTPHEE EHQLLTPSPC TNLQDLRGTA SMVGKRSVSF SGMDTCREMS 60
AEEDLSDDGS QAGEKKRRLT VEQVRTLEKN FELGNKLEPE RKMQLARTLG MQPRQVAIWF 120
QNRRARWKTK QLEKDYDVLK RHFEAIKSEN EALKAHNNQL QAEIMTLRGR EPSDLINLNK 180
DTEGSCSNRS ENSSEINLDI SRQSVDKSPL HPHQSSTFFQ PVRPGDMDQI FQSSSRPETQ 240
CPKLENGGHE GTLSNLLCSM EDQSAFWSWS DHHSFH
|
| Nucleic Localization
Signal ? help
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 |
| No. |
Start |
End |
Sequence |
| 1 | 122 | 130 | RRARWKTKQ |
| Functional Description ? help
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| Source |
Description |
| UniProt | Probable transcription factor. {ECO:0000250}. |
| Annotation --
Nucleotide ? help
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| Source |
Hit ID |
E-value |
Description |
| GenBank | JX620522 | 4e-88 | JX620522.1 Gossypium hirsutum clone NBRI_GE66779 microsatellite sequence. |
