PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

GSMUA_Achr7P09340_001

Organism

Musa acuminata

Taxonomic ID

4641

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Zingiberales; Musaceae; Musa

Family

C3H

Protein Properties

Length: 358aa MW: 38475 Da PI: 6.5031

Description

C3H family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
GSMUA_Achr7P09340_001	genome	CIRAD	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	zf-CCCH	27.4	6e-09	131	152	4	26
---SGGGGTS--TTTTT-SS-SS CS zf-CCCH 4 elCrffartGtCkyGdrCkFaHg 26 + C++f++ G Ck+Gd C FaHg GSMUA_Achr7P09340_001 131 AACPDFRK-GGCKRGDACEFAHG 152 78****.***********9 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
SMART	SM00356	1.7E-5	127	153	IPR000571	Zinc finger, CCCH-type
PROSITE profile	PS50103	13.178	128	154	IPR000571	Zinc finger, CCCH-type
Pfam	PF00642	5.1E-7	131	152	IPR000571	Zinc finger, CCCH-type
Gene3D	G3DSA:4.10.1000.10	1.2E-5	132	154	IPR000571	Zinc finger, CCCH-type
SMART	SM00356	12	162	185	IPR000571	Zinc finger, CCCH-type
PROSITE profile	PS50103	6.258	162	186	IPR000571	Zinc finger, CCCH-type

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0006979	Biological Process	response to oxidative stress
GO:0005886	Cellular Component	plasma membrane
GO:0046872	Molecular Function	metal ion binding

Sequence ? help Back to Top
Protein Sequence Length: 358 aa Download sequence Send to blast
MMMIGGEGGH PSDPTGHVPP WSSPFEDPTG GIGYHLGAAG GAEYGLGESA LAAALQRYLP 60 CNIDEPGAEE EEVDEPDAAV DVYSSDEFRM YEFKVRRCAR GRSHDWTECP FAHPGEKARR 120 RDPRKYHYSG AACPDFRKGG CKRGDACEFA HGVFECWLHP ARYRTQPCKD GTACRRRVCF 180 FAHTPDQLRH IMSSSPTSTL ISPPISPPSD SPPMSPSTAA IRRASWPMRS SLNEVVASLR 240 QLQLNKVKSD LSSWGLQVGG GAFGSPRGSG AGFRAGFCSL PTTPTTASAA VSGGGVGWFD 300 GMDSGFTEGE EPVERVESGR ALRAKIFEKL SKECVTERAN AAASTPAPDV GWVSELVM

Sequence ? help Back to Top

Protein Sequence Length: 358 aa Download sequence Send to blast

MMMIGGEGGH PSDPTGHVPP WSSPFEDPTG GIGYHLGAAG GAEYGLGESA LAAALQRYLP  60
CNIDEPGAEE EEVDEPDAAV DVYSSDEFRM YEFKVRRCAR GRSHDWTECP FAHPGEKARR  120
RDPRKYHYSG AACPDFRKGG CKRGDACEFA HGVFECWLHP ARYRTQPCKD GTACRRRVCF  180
FAHTPDQLRH IMSSSPTSTL ISPPISPPSD SPPMSPSTAA IRRASWPMRS SLNEVVASLR  240
QLQLNKVKSD LSSWGLQVGG GAFGSPRGSG AGFRAGFCSL PTTPTTASAA VSGGGVGWFD  300
GMDSGFTEGE EPVERVESGR ALRAKIFEKL SKECVTERAN AAASTPAPDV GWVSELVM

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Nucleotide ? help Back to Top
Source	Hit ID	E-value	Description
GenBank	AK354618	1e-98	AK354618.1 Hordeum vulgare subsp. vulgare mRNA for predicted protein, complete cds, clone: NIASHv1009D01.
GenBank	AK357110	1e-98	AK357110.1 Hordeum vulgare subsp. vulgare mRNA for predicted protein, complete cds, clone: NIASHv1046E14.
GenBank	AK364777	1e-98	AK364777.1 Hordeum vulgare subsp. vulgare mRNA for predicted protein, complete cds, clone: NIASHv2028F04.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_009408887.1	0.0	PREDICTED: zinc finger CCCH domain-containing protein 2-like
Swissprot	O82199	1e-110	C3H20_ARATH; Zinc finger CCCH domain-containing protein 20
TrEMBL	M0TG22	0.0	M0TG22_MUSAM; Uncharacterized protein
STRING	GSMUA_Achr7P09340_001	0.0	(Musa acuminata)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Monocots	OGMP1578	34	93

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT2G19810.1	4e-86	C3H family protein

Publications ? help Back to Top
Ding Y, et al. Four distinct types of dehydration stress memory genes in Arabidopsis thaliana. BMC Plant Biol., 2013. 13: p. 229 [PMID:24377444] Swain S,Singh N,Nandi AK Identification of plant defence regulators through transcriptional profiling of Arabidopsis thaliana cdd1 mutant. J. Biosci., 2015. 40(1): p. 137-46 [PMID:25740148] Singh N,Swain S,Singh A,Nandi AK AtOZF1 Positively Regulates Defense Against Bacterial Pathogens and NPR1-Independent Salicylic Acid Signaling. Mol. Plant Microbe Interact., 2018. 31(3): p. 323-333 [PMID:29327969]