PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID GSMUA_Achr7P09150_001
Organism
Musa acuminata
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Zingiberales; Musaceae; Musa
Family C2H2
Protein Properties Length: 410aa    MW: 45291.8 Da    PI: 9.2616
Description C2H2 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
GSMUA_Achr7P09150_001genomeCIRADView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-C2H217.51.1e-055981123
                           EEETTTTEEESSHHHHHHHHHHT CS
                zf-C2H2  1 ykCpdCgksFsrksnLkrHirtH 23
                           ++C++C+k F r  nL+ H r H
  GSMUA_Achr7P09150_001 59 FVCEICNKGFQRDQNLQLHRRGH 81
                           89*******************88 PP
2zf-C2H211.30.0011134156123
                            EEETTTTEEESSHHHHHHHHHHT CS
                zf-C2H2   1 ykCpdCgksFsrksnLkrHirtH 23 
                            +kC +C+k +  ks+ k H + +
  GSMUA_Achr7P09150_001 134 WKCDKCSKKYAVKSDWKAHSKIC 156
                            58*****************9876 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF576678.9E-85881No hitNo description
Gene3DG3DSA:3.30.160.601.3E-55881IPR013087Zinc finger C2H2-type/integrase DNA-binding domain
SMARTSM003550.0175981IPR015880Zinc finger, C2H2-like
PfamPF121716.3E-55981IPR022755Zinc finger, double-stranded RNA binding
PROSITE profilePS5015710.9495981IPR007087Zinc finger, C2H2
PROSITE patternPS0002806181IPR007087Zinc finger, C2H2
SMARTSM0035511099129IPR015880Zinc finger, C2H2-like
Gene3DG3DSA:3.30.160.601.6E-4122155IPR013087Zinc finger C2H2-type/integrase DNA-binding domain
SuperFamilySSF576678.9E-8129154No hitNo description
SMARTSM00355130134154IPR015880Zinc finger, C2H2-like
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003676Molecular Functionnucleic acid binding
GO:0046872Molecular Functionmetal ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 410 aa     Download sequence    Send to blast
MSNLTSASGE ASASSNQQSS LIATEPSPVK KKRNLPGNPD PDAEVIALSP KTLMATNRFV  60
CEICNKGFQR DQNLQLHRRG HNLPWKLKQR SKEARKKVYV CPEVTCVHHE PSRALGDLTG  120
IKKHFSRKHG EKKWKCDKCS KKYAVKSDWK AHSKICGTRE YRCDCGTLFS RHHIIYSALL  180
RDSFVTHRAF CDALTERSSR FTRFMRATEV GNSPSSSHGL QQEIALKREQ QHFDRSDIPP  240
WLNCQAITSL NYFDVMPSSI YPMRLDEAYP HENPVPPPPF FPTDHSATSF PHMSATALLQ  300
QAAQMGSTVS RPSDADQMAT HDSSAYNATS GFDLGLSSSH QEVSGGREGG FVGSFDDALG  360
RIPGFKGRQN SFVDGVVRSQ GRGEGGGGGG NDGMTRDFLG PRAVFPQGYP
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5b3h_C2e-30130202366Zinc finger protein JACKDAW
5b3h_F2e-30130202366Zinc finger protein JACKDAW
Search in ModeBase
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
18596KLKQRSKEARKK
Functional Description ? help Back to Top
Source Description
UniProtProbable transcription factor. {ECO:0000305}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_008793218.11e-171protein indeterminate-domain 7-like
SwissprotQ8H1F51e-113IDD7_ARATH; Protein indeterminate-domain 7
TrEMBLM0TG030.0M0TG03_MUSAM; Uncharacterized protein
STRINGGSMUA_Achr7P09150_0010.0(Musa acuminata)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP20238320
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G55110.11e-103indeterminate(ID)-domain 7
Publications ? help Back to Top
  1. Moreno-Risueno MA, et al.
    Transcriptional control of tissue formation throughout root development.
    Science, 2015. 350(6259): p. 426-30
    [PMID:26494755]